[DATALAD RUNCMD] Compute NYU_2/sub-0025077/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025077/ses-1/anat/sub-0025077_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025077/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025077/ses-1/label/catROI_sub-0025077_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/p5/MD5E-s57918--8c7c6c753a2585693f2674f611fb7ede.mat/MD5E-s57918--8c7c6c753a2585693f2674f611fb7ede.mat

NYU_2/sub-0025077/ses-1/label/catROI_sub-0025077_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/gG/MD5E-s188840--242aa44a965f068010961c8e3918eb70.xml/MD5E-s188840--242aa44a965f068010961c8e3918eb70.xml

NYU_2/sub-0025077/ses-1/label/catROI_sub-0025077_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z1/Fw/MD5E-s57955--0660be51eff37b6c887ffc3f1e85c4ac.mat/MD5E-s57955--0660be51eff37b6c887ffc3f1e85c4ac.mat

NYU_2/sub-0025077/ses-1/label/catROI_sub-0025077_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Zp/jG/MD5E-s188992--339d806608fcae683f143fdc2d665c32.xml/MD5E-s188992--339d806608fcae683f143fdc2d665c32.xml

NYU_2/sub-0025077/ses-1/label/catROIs_sub-0025077_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/3g/MD5E-s120242--c3ac810ec56dcf96ba7e8797df70daa1.mat/MD5E-s120242--c3ac810ec56dcf96ba7e8797df70daa1.mat

NYU_2/sub-0025077/ses-1/label/catROIs_sub-0025077_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/w9/MD5E-s332125--4df37ab3085b0c6f02677fc6e25e55a2.xml/MD5E-s332125--4df37ab3085b0c6f02677fc6e25e55a2.xml

NYU_2/sub-0025077/ses-1/label/catROIs_sub-0025077_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6q/F4/MD5E-s120342--e04453a2f89878e20a54d4bf7f112fdc.mat/MD5E-s120342--e04453a2f89878e20a54d4bf7f112fdc.mat

NYU_2/sub-0025077/ses-1/label/catROIs_sub-0025077_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gm/Vw/MD5E-s332176--ccc73e4440f30f4a03c4c8564141d560.xml/MD5E-s332176--ccc73e4440f30f4a03c4c8564141d560.xml

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/GW/MD5E-s146584--2dce469ab4aaa302c025403b70eb5b93.nii.gz/MD5E-s146584--2dce469ab4aaa302c025403b70eb5b93.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GK/qg/MD5E-s146137--ddfd5b96e34059a65ee837141652a888.nii.gz/MD5E-s146137--ddfd5b96e34059a65ee837141652a888.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/2V/MD5E-s163093--8862a27bf9135069987b1d98e5d54a22.nii.gz/MD5E-s163093--8862a27bf9135069987b1d98e5d54a22.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GF/g0/MD5E-s162800--63b99cf7c1e1f4dec34f7a627767e9fa.nii.gz/MD5E-s162800--63b99cf7c1e1f4dec34f7a627767e9fa.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/4m/MD5E-s221379--8f19b21f0a9cad5cd14a80ee5a0dd504.nii.gz/MD5E-s221379--8f19b21f0a9cad5cd14a80ee5a0dd504.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pg/X3/MD5E-s220749--2ecc297c343a5c285ce2cc5840971b33.nii.gz/MD5E-s220749--2ecc297c343a5c285ce2cc5840971b33.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/qW/MD5E-s243971--be623d045e443faccfa7afc3a23dd2c1.nii.gz/MD5E-s243971--be623d045e443faccfa7afc3a23dd2c1.nii.gz

NYU_2/sub-0025077/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2G/K1/MD5E-s244089--35ccd0fc049c6c52132e8d94f7bff89a.nii.gz/MD5E-s244089--35ccd0fc049c6c52132e8d94f7bff89a.nii.gz

NYU_2/sub-0025077/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xx/xX/MD5E-s19633--a2fc9b9c80c65d8758ad57cae3fe7b82.nii.gz/MD5E-s19633--a2fc9b9c80c65d8758ad57cae3fe7b82.nii.gz

NYU_2/sub-0025077/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k9/kw/MD5E-s19865--55f5b6d76325dcc80535872fbdbc38e4.nii.gz/MD5E-s19865--55f5b6d76325dcc80535872fbdbc38e4.nii.gz

NYU_2/sub-0025077/ses-1/mri/aal3_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/kQ/MD5E-s167462--6b9da461bf97f33cc6a12a67e2e6fcc1.nii.gz/MD5E-s167462--6b9da461bf97f33cc6a12a67e2e6fcc1.nii.gz

NYU_2/sub-0025077/ses-1/mri/aal3_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7M/8V/MD5E-s168630--ec2bc99cb6d00a38c36a61c7f5787e95.nii.gz/MD5E-s168630--ec2bc99cb6d00a38c36a61c7f5787e95.nii.gz

NYU_2/sub-0025077/ses-1/mri/anatomy3_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/FP/MD5E-s115599--64bd0be226a80ff54890a0f9ea1aac9e.nii.gz/MD5E-s115599--64bd0be226a80ff54890a0f9ea1aac9e.nii.gz

NYU_2/sub-0025077/ses-1/mri/anatomy3_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/anon_misub-0025077_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/gP/g2/MD5E-s4092582--2cd2836a39f18dfd00d683da61325f2c.nii.gz/MD5E-s4092582--2cd2836a39f18dfd00d683da61325f2c.nii.gz

NYU_2/sub-0025077/ses-1/mri/anon_misub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/anon_msub-0025077_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Zz/m2/MD5E-s9126373--51978b0accfe3d53672be7e99ebcb81e.nii.gz/MD5E-s9126373--51978b0accfe3d53672be7e99ebcb81e.nii.gz

NYU_2/sub-0025077/ses-1/mri/anon_msub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/cat_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/53/MD5E-s87263--c0896c5d3d8c8eccceedbeb9297cb8e4.nii.gz/MD5E-s87263--c0896c5d3d8c8eccceedbeb9297cb8e4.nii.gz

NYU_2/sub-0025077/ses-1/mri/cat_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/cobra_sub-0025077_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/59/MD5E-s40036--d67fcfed202fc151c2120f22a4bb2310.nii.gz/MD5E-s40036--d67fcfed202fc151c2120f22a4bb2310.nii.gz

NYU_2/sub-0025077/ses-1/mri/cobra_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/hammers_sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/hammers_sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/ibsr_sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/ibsr_sub-0025077_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/it_sub-0025077_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025077/ses-1/mri/it_sub-0025077_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025077/ses-1/mri/it_sub-0025077_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/it_sub-0025077_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025077/ses-1/mri/iy_sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/iy_sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/julichbrain_sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/julichbrain_sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/lpba40_sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/lpba40_sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/m0wp1sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/m0wp1sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/m0wp2sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/m0wp2sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/m0wp3sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/m0wp3sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/mori_sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/mori_sub-0025077_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/mwp1sub-0025077_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025077/ses-1/mri/mwp1sub-0025077_ses-1_run-2_T1w.nii.gz

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