[DATALAD RUNCMD] Compute SWU_4/sub-0025834/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025834/ses-2/anat/sub-0025834_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025834/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025834/ses-2/label/catROI_sub-0025834_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/83/MD5E-s58046--47f90ad0ef761c9aaf44c5f5890172e1.mat/MD5E-s58046--47f90ad0ef761c9aaf44c5f5890172e1.mat

SWU_4/sub-0025834/ses-2/label/catROI_sub-0025834_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/MP/MD5E-s188452--45e2bc9d1896cfef9f064f12e6f53d75.xml/MD5E-s188452--45e2bc9d1896cfef9f064f12e6f53d75.xml

SWU_4/sub-0025834/ses-2/label/catROIs_sub-0025834_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/40/MD5E-s119920--0be7deb991f3c2a94555c176bf1b337b.mat/MD5E-s119920--0be7deb991f3c2a94555c176bf1b337b.mat

SWU_4/sub-0025834/ses-2/label/catROIs_sub-0025834_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/Fm/MD5E-s332063--bfd45fa276c5c73d3f463c1f80e96997.xml/MD5E-s332063--bfd45fa276c5c73d3f463c1f80e96997.xml

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/Px/MD5E-s181215--8bf0f2baf894ba9c513447b356cc1926.nii.gz/MD5E-s181215--8bf0f2baf894ba9c513447b356cc1926.nii.gz

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/z3/MD5E-s203068--8104f4d12f3acef1de6f1c7fe4a2f93b.nii.gz/MD5E-s203068--8104f4d12f3acef1de6f1c7fe4a2f93b.nii.gz

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/4w/MD5E-s272766--f4e2ffda79eead0018755abe2c840799.nii.gz/MD5E-s272766--f4e2ffda79eead0018755abe2c840799.nii.gz

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025834/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/vG/MD5E-s303408--932c65f1afd880d60b6a7fd1d2456642.nii.gz/MD5E-s303408--932c65f1afd880d60b6a7fd1d2456642.nii.gz

SWU_4/sub-0025834/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025834/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/PP/MD5E-s26151--cd551a723d776a676f0678f47083656f.nii.gz/MD5E-s26151--cd551a723d776a676f0678f47083656f.nii.gz

SWU_4/sub-0025834/ses-2/mri/aal3_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025834/ses-2/mri/aal3_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/zX/MD5E-s205433--00f7e8f7b8537edb4683bcabea6917a1.nii.gz/MD5E-s205433--00f7e8f7b8537edb4683bcabea6917a1.nii.gz

SWU_4/sub-0025834/ses-2/mri/anatomy3_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025834/ses-2/mri/anatomy3_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/KX/MD5E-s147557--ae80c25a6f4d55d20e9963d63bafbe19.nii.gz/MD5E-s147557--ae80c25a6f4d55d20e9963d63bafbe19.nii.gz

SWU_4/sub-0025834/ses-2/mri/anon_misub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/Pk/MD5E-s9300539--c297a3f4285af6b5a2ca0fee2e27ebc5.nii.gz/MD5E-s9300539--c297a3f4285af6b5a2ca0fee2e27ebc5.nii.gz

SWU_4/sub-0025834/ses-2/mri/anon_msub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/2J/MD5E-s8908769--9a09cae3b155a82c6a4d04c8581ecc29.nii.gz/MD5E-s8908769--9a09cae3b155a82c6a4d04c8581ecc29.nii.gz

SWU_4/sub-0025834/ses-2/mri/cat_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/Vk/MD5E-s112154--933a665e087fab1e487db41bbe313e1c.nii.gz/MD5E-s112154--933a665e087fab1e487db41bbe313e1c.nii.gz

SWU_4/sub-0025834/ses-2/mri/cobra_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025834/ses-2/mri/cobra_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/JM/MD5E-s52106--2d1f945a46d7569227596961ee42e46a.nii.gz/MD5E-s52106--2d1f945a46d7569227596961ee42e46a.nii.gz

SWU_4/sub-0025834/ses-2/mri/hammers_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025834/ses-2/mri/hammers_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/Gv/MD5E-s162064--3e3a9604d91264c0fc1907b4e41d04e1.nii.gz/MD5E-s162064--3e3a9604d91264c0fc1907b4e41d04e1.nii.gz

SWU_4/sub-0025834/ses-2/mri/ibsr_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025834/ses-2/mri/ibsr_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/4P/MD5E-s170352--ad076fea80a4454726245590a293cada.nii.gz/MD5E-s170352--ad076fea80a4454726245590a293cada.nii.gz

SWU_4/sub-0025834/ses-2/mri/it_sub-0025834_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/KQ/MD5E-s281--e2553491f42ec344bc61ca8b1ac84844.mat/MD5E-s281--e2553491f42ec344bc61ca8b1ac84844.mat

SWU_4/sub-0025834/ses-2/mri/it_sub-0025834_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/JV/MD5E-s281--86fb396bc07ffcf8a7991fba2630c783.mat/MD5E-s281--86fb396bc07ffcf8a7991fba2630c783.mat

SWU_4/sub-0025834/ses-2/mri/iy_sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/1p/MD5E-s52887537--b80baa153877b21d1fdb47e15f16fe17.nii.gz/MD5E-s52887537--b80baa153877b21d1fdb47e15f16fe17.nii.gz

SWU_4/sub-0025834/ses-2/mri/julichbrain_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025834/ses-2/mri/julichbrain_sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/lpba40_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025834/ses-2/mri/lpba40_sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/m0wp1sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/Qw/MD5E-s2586824--72b97dc850bf5882266f7af3b8657272.nii.gz/MD5E-s2586824--72b97dc850bf5882266f7af3b8657272.nii.gz

SWU_4/sub-0025834/ses-2/mri/m0wp2sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025834/ses-2/mri/m0wp3sub-0025834_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/PW/MD5E-s2566682--8cc529704f8432493e1d596f17bf4bab.nii.gz/MD5E-s2566682--8cc529704f8432493e1d596f17bf4bab.nii.gz

SWU_4/sub-0025834/ses-2/mri/mori_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025834/ses-2/mri/mori_sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/mwp1sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/mwp2sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/mwp3sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/neuromorphometrics_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025834/ses-2/mri/neuromorphometrics_sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/p0sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/p1sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/p2sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/p3sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/mri/rp1sub-0025834_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025834/ses-2/mri/rp2sub-0025834_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025834/ses-2/mri/rp3sub-0025834_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025834/ses-2/mri/t_sub-0025834_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025834/ses-2/mri/t_sub-0025834_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025834/ses-2/mri/thalamus_sub-0025834_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025834/ses-2/mri/thalamus_sub-0025834_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025834/ses-2/surf/lh.edgemap32k.sub-0025834_ses-2_run-1_T1w.mat

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