[DATALAD RUNCMD] Compute NYU_2/sub-0025004/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025004/ses-1/anat/sub-0025004_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025004/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025004/ses-1/label/catROI_sub-0025004_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z0/qq/MD5E-s57939--d4b6ba425150ce393913ee9d882f655a.mat/MD5E-s57939--d4b6ba425150ce393913ee9d882f655a.mat

NYU_2/sub-0025004/ses-1/label/catROI_sub-0025004_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KP/3v/MD5E-s188586--6bba8890a9bb79db64825d0bf6bd2196.xml/MD5E-s188586--6bba8890a9bb79db64825d0bf6bd2196.xml

NYU_2/sub-0025004/ses-1/label/catROI_sub-0025004_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/39/MD5E-s57964--ba873c9bf8b3a2cad94bc5b1ad4d678d.mat/MD5E-s57964--ba873c9bf8b3a2cad94bc5b1ad4d678d.mat

NYU_2/sub-0025004/ses-1/label/catROI_sub-0025004_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/m4/MD5E-s188691--2728b2e71247b58702e38d1f63574c47.xml/MD5E-s188691--2728b2e71247b58702e38d1f63574c47.xml

NYU_2/sub-0025004/ses-1/label/catROIs_sub-0025004_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x3/4k/MD5E-s120295--720f2fff1f9d37dce12f42fd33d282fe.mat/MD5E-s120295--720f2fff1f9d37dce12f42fd33d282fe.mat

NYU_2/sub-0025004/ses-1/label/catROIs_sub-0025004_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1m/JV/MD5E-s332065--f1660bc9a865851a731e496dde1ccdf3.xml/MD5E-s332065--f1660bc9a865851a731e496dde1ccdf3.xml

NYU_2/sub-0025004/ses-1/label/catROIs_sub-0025004_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/77/MD5E-s120238--493e741bd2597e2db4850a1fc6b401dd.mat/MD5E-s120238--493e741bd2597e2db4850a1fc6b401dd.mat

NYU_2/sub-0025004/ses-1/label/catROIs_sub-0025004_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/G2/MD5E-s332058--4b4b0544ed60348600c5c236440630c6.xml/MD5E-s332058--4b4b0544ed60348600c5c236440630c6.xml

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x5/6j/MD5E-s151918--2e6f1cd20d4fdb1a4a9e56a8269a8101.nii.gz/MD5E-s151918--2e6f1cd20d4fdb1a4a9e56a8269a8101.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/x9/MD5E-s152221--62eec8d549951344bf44991668d5b724.nii.gz/MD5E-s152221--62eec8d549951344bf44991668d5b724.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fx/F1/MD5E-s169237--fd64b2656da172e929f74513d707365e.nii.gz/MD5E-s169237--fd64b2656da172e929f74513d707365e.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/MP/MD5E-s169177--2d8ae7edd572968a0ba46dd04e0606fb.nii.gz/MD5E-s169177--2d8ae7edd572968a0ba46dd04e0606fb.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pj/PX/MD5E-s229080--820c14c2e0af5da20c3e7aac2b7a08ac.nii.gz/MD5E-s229080--820c14c2e0af5da20c3e7aac2b7a08ac.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/Q5/MD5E-s228786--1d20b0749824f7fdad2b512fe38c8859.nii.gz/MD5E-s228786--1d20b0749824f7fdad2b512fe38c8859.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m2/xW/MD5E-s253528--cfa087260335f0ef61cc91b9d95f98a1.nii.gz/MD5E-s253528--cfa087260335f0ef61cc91b9d95f98a1.nii.gz

NYU_2/sub-0025004/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/7K/MD5E-s253721--12894197aa0a47254e87addfd4740443.nii.gz/MD5E-s253721--12894197aa0a47254e87addfd4740443.nii.gz

NYU_2/sub-0025004/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1M/Kq/MD5E-s19860--7628ca019de8bd38f9895a3e9f31dc45.nii.gz/MD5E-s19860--7628ca019de8bd38f9895a3e9f31dc45.nii.gz

NYU_2/sub-0025004/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/W1/MD5E-s19828--edf26f5df6d9d025917c327b7426371b.nii.gz/MD5E-s19828--edf26f5df6d9d025917c327b7426371b.nii.gz

NYU_2/sub-0025004/ses-1/mri/aal3_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w6/8X/MD5E-s171157--b75aacee963a8d9b61a06c321619a4d6.nii.gz/MD5E-s171157--b75aacee963a8d9b61a06c321619a4d6.nii.gz

NYU_2/sub-0025004/ses-1/mri/aal3_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p7/6K/MD5E-s171198--d107492627e9dd77ce4f434d32e1bac4.nii.gz/MD5E-s171198--d107492627e9dd77ce4f434d32e1bac4.nii.gz

NYU_2/sub-0025004/ses-1/mri/anatomy3_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gV/XF/MD5E-s121828--3a054ad0bc6507a729b44f67073fc518.nii.gz/MD5E-s121828--3a054ad0bc6507a729b44f67073fc518.nii.gz

NYU_2/sub-0025004/ses-1/mri/anatomy3_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/v3/MD5E-s121297--3f5e985753600f3e527f3e9ff1410c14.nii.gz/MD5E-s121297--3f5e985753600f3e527f3e9ff1410c14.nii.gz

NYU_2/sub-0025004/ses-1/mri/anon_misub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jj/Qv/MD5E-s3735285--e32386a952fe6af790b79342091ca46e.nii.gz/MD5E-s3735285--e32386a952fe6af790b79342091ca46e.nii.gz

NYU_2/sub-0025004/ses-1/mri/anon_misub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/31/MD5E-s3745402--8c5c289e5adde2849851da963d7a73c8.nii.gz/MD5E-s3745402--8c5c289e5adde2849851da963d7a73c8.nii.gz

NYU_2/sub-0025004/ses-1/mri/anon_msub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/26/7J/MD5E-s9242508--98fadf34dcfb0ce687a9c4a086fb23e0.nii.gz/MD5E-s9242508--98fadf34dcfb0ce687a9c4a086fb23e0.nii.gz

NYU_2/sub-0025004/ses-1/mri/anon_msub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/85/MD5E-s9212239--2613a29fbd860ac39538657a1a3bb239.nii.gz/MD5E-s9212239--2613a29fbd860ac39538657a1a3bb239.nii.gz

NYU_2/sub-0025004/ses-1/mri/cat_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/23/jk/MD5E-s88560--fb8dd16533fc85ed442581caccb721e9.nii.gz/MD5E-s88560--fb8dd16533fc85ed442581caccb721e9.nii.gz

NYU_2/sub-0025004/ses-1/mri/cat_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/4j/MD5E-s88147--ffe0a90fc3302548cce9bc3fcbb6c9c6.nii.gz/MD5E-s88147--ffe0a90fc3302548cce9bc3fcbb6c9c6.nii.gz

NYU_2/sub-0025004/ses-1/mri/cobra_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QP/mG/MD5E-s41165--970e378998a220ce42f5e66baa767980.nii.gz/MD5E-s41165--970e378998a220ce42f5e66baa767980.nii.gz

NYU_2/sub-0025004/ses-1/mri/cobra_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/fx/MD5E-s41174--024dbbd71b27605d09db75f93a378aa9.nii.gz/MD5E-s41174--024dbbd71b27605d09db75f93a378aa9.nii.gz

NYU_2/sub-0025004/ses-1/mri/hammers_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fz/Qj/MD5E-s131941--e1bd416fa107c836e36449572123f5f1.nii.gz/MD5E-s131941--e1bd416fa107c836e36449572123f5f1.nii.gz

NYU_2/sub-0025004/ses-1/mri/hammers_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/vJ/MD5E-s131631--a11efec3eeb830e82bc6d5ae8f32ddd8.nii.gz/MD5E-s131631--a11efec3eeb830e82bc6d5ae8f32ddd8.nii.gz

NYU_2/sub-0025004/ses-1/mri/ibsr_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3j/mM/MD5E-s141247--f07413bf23768d03b409ad6bfd19905a.nii.gz/MD5E-s141247--f07413bf23768d03b409ad6bfd19905a.nii.gz

NYU_2/sub-0025004/ses-1/mri/ibsr_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/p6/MD5E-s141169--4c3e513130b03faa16893e7c4c4914bf.nii.gz/MD5E-s141169--4c3e513130b03faa16893e7c4c4914bf.nii.gz

NYU_2/sub-0025004/ses-1/mri/it_sub-0025004_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qg/f4/MD5E-s284--444876dd0541b497d504e2b134c22ddf.mat/MD5E-s284--444876dd0541b497d504e2b134c22ddf.mat

NYU_2/sub-0025004/ses-1/mri/it_sub-0025004_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f1/5J/MD5E-s284--d759fc1b4fbbb642b0cfb69aa070f62b.mat/MD5E-s284--d759fc1b4fbbb642b0cfb69aa070f62b.mat

NYU_2/sub-0025004/ses-1/mri/it_sub-0025004_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/F8/MD5E-s284--634f9e0ea65109aa05779f7352c5ee50.mat/MD5E-s284--634f9e0ea65109aa05779f7352c5ee50.mat

NYU_2/sub-0025004/ses-1/mri/it_sub-0025004_ses-1_run-2_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mz/X1/MD5E-s283--e88cd7369090034781e711f18d3d146d.mat/MD5E-s283--e88cd7369090034781e711f18d3d146d.mat

NYU_2/sub-0025004/ses-1/mri/iy_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jZ/4P/MD5E-s35455299--e0a9b84c701bef0dc40349eef08d5ca6.nii.gz/MD5E-s35455299--e0a9b84c701bef0dc40349eef08d5ca6.nii.gz

NYU_2/sub-0025004/ses-1/mri/iy_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/gG/MD5E-s35475240--9c8e76f6d74df2eda7a77a25e3f66c4c.nii.gz/MD5E-s35475240--9c8e76f6d74df2eda7a77a25e3f66c4c.nii.gz

NYU_2/sub-0025004/ses-1/mri/julichbrain_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W1/Mp/MD5E-s179793--9d03aa344de5723ee4b8def1f88b0c34.nii.gz/MD5E-s179793--9d03aa344de5723ee4b8def1f88b0c34.nii.gz

NYU_2/sub-0025004/ses-1/mri/julichbrain_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025004/ses-1/mri/lpba40_sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/F3/v9/MD5E-s130164--a13d6e4a76fb605001c372a020970863.nii.gz/MD5E-s130164--a13d6e4a76fb605001c372a020970863.nii.gz

NYU_2/sub-0025004/ses-1/mri/lpba40_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025004/ses-1/mri/m0wp1sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/54/WK/MD5E-s2591127--47ce80ea830a7e5ee3b502443efc6f0d.nii.gz/MD5E-s2591127--47ce80ea830a7e5ee3b502443efc6f0d.nii.gz

NYU_2/sub-0025004/ses-1/mri/m0wp1sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/Z0/MD5E-s2592010--59276be38aa0121980397a7023869b75.nii.gz/MD5E-s2592010--59276be38aa0121980397a7023869b75.nii.gz

NYU_2/sub-0025004/ses-1/mri/m0wp2sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/65/jZ/MD5E-s2263124--c824f1604347871eb4ac22eff14b7fe5.nii.gz/MD5E-s2263124--c824f1604347871eb4ac22eff14b7fe5.nii.gz

NYU_2/sub-0025004/ses-1/mri/m0wp2sub-0025004_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025004/ses-1/mri/m0wp3sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025004/ses-1/mri/m0wp3sub-0025004_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025004/ses-1/mri/mori_sub-0025004_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025004/ses-1/mri/mori_sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025004/ses-1/mri/mwp1sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025004/ses-1/mri/mwp1sub-0025004_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025004/ses-1/mri/mwp2sub-0025004_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025004/ses-1/mri/mwp2sub-0025004_ses-1_run-2_T1w.nii.gz

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