[DATALAD RUNCMD] Compute IPCAS_1/sub-0025507/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_1/sub-0025507/ses-1/anat/sub-0025507_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_1/sub-0025507/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_1/sub-0025507/ses-1/label/catROI_sub-0025507_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/87/MD5E-s61226--07ce64f99a430a4a9502de8d9d9ddf71.mat/MD5E-s61226--07ce64f99a430a4a9502de8d9d9ddf71.mat

IPCAS_1/sub-0025507/ses-1/label/catROI_sub-0025507_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/8J/MD5E-s189008--4b6cf2e673d1351e2a1adfcef2293fe8.xml/MD5E-s189008--4b6cf2e673d1351e2a1adfcef2293fe8.xml

IPCAS_1/sub-0025507/ses-1/label/catROIs_sub-0025507_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/12/KF/MD5E-s120043--311a64e9f8b62ccf9ad23f2a21777c7b.mat/MD5E-s120043--311a64e9f8b62ccf9ad23f2a21777c7b.mat

IPCAS_1/sub-0025507/ses-1/label/catROIs_sub-0025507_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/kG/MD5E-s332200--eb462b965b3d2140e46e8c491be70eda.xml/MD5E-s332200--eb462b965b3d2140e46e8c491be70eda.xml

IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_1/sub-0025507/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025507_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025507/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/aal3_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/aal3_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/anatomy3_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/anatomy3_sub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/anon_misub-0025507_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025507/ses-1/mri/anon_msub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/cat_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/cobra_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_1/sub-0025507/ses-1/mri/cobra_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/hammers_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_1/sub-0025507/ses-1/mri/hammers_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/ibsr_sub-0025507_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_1/sub-0025507/ses-1/mri/ibsr_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/it_sub-0025507_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/P3/MD5E-s282--d801652b7690b81e882c97a28d94bad2.mat/MD5E-s282--d801652b7690b81e882c97a28d94bad2.mat

IPCAS_1/sub-0025507/ses-1/mri/it_sub-0025507_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_1/sub-0025507/ses-1/mri/iy_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/julichbrain_sub-0025507_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025507/ses-1/mri/julichbrain_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/lpba40_sub-0025507_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025507/ses-1/mri/lpba40_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/m0wp1sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/m0wp2sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/m0wp3sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/mori_sub-0025507_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025507/ses-1/mri/mori_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/mwp1sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/mwp2sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/mwp3sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/neuromorphometrics_sub-0025507_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025507/ses-1/mri/neuromorphometrics_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/p0sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/p1sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/p2sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/p3sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/rp1sub-0025507_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/rp2sub-0025507_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/rp3sub-0025507_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/t_sub-0025507_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_1/sub-0025507/ses-1/mri/t_sub-0025507_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_1/sub-0025507/ses-1/mri/thalamus_sub-0025507_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025507/ses-1/mri/thalamus_sub-0025507_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025507/ses-1/mri/wj_sub-0025507_ses-1_run-1_T1w.nii.gz

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