[DATALAD RUNCMD] Compute SWU_4/sub-0025850/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025850/ses-1/anat/sub-0025850_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025850/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025850/ses-1/label/catROI_sub-0025850_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/F8/MD5E-s61290--ff42cfcdfc584af3d2f6a04233a32a4d.mat/MD5E-s61290--ff42cfcdfc584af3d2f6a04233a32a4d.mat

SWU_4/sub-0025850/ses-1/label/catROI_sub-0025850_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xV/5k/MD5E-s189282--0a26270c33b388262220035817671192.xml/MD5E-s189282--0a26270c33b388262220035817671192.xml

SWU_4/sub-0025850/ses-1/label/catROIs_sub-0025850_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/JZ/MD5E-s120138--da972a0ef84b5c8ac55f612940611daf.mat/MD5E-s120138--da972a0ef84b5c8ac55f612940611daf.mat

SWU_4/sub-0025850/ses-1/label/catROIs_sub-0025850_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0V/Zq/MD5E-s332162--944dfe45fa51885f373fc0a86711b588.xml/MD5E-s332162--944dfe45fa51885f373fc0a86711b588.xml

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/87/MD5E-s152392--3391fe773b7d96d4a830ddd35e601b9e.nii.gz/MD5E-s152392--3391fe773b7d96d4a830ddd35e601b9e.nii.gz

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/Vm/MD5E-s171997--f7c749eb3c7a08613c123932c600900c.nii.gz/MD5E-s171997--f7c749eb3c7a08613c123932c600900c.nii.gz

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/XJ/MD5E-s231114--210880ecafb8623ee1131cdf5c4a243f.nii.gz/MD5E-s231114--210880ecafb8623ee1131cdf5c4a243f.nii.gz

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025850/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/WK/MD5E-s257827--64cd4fd97a354abdfe0d6da41452e67b.nii.gz/MD5E-s257827--64cd4fd97a354abdfe0d6da41452e67b.nii.gz

SWU_4/sub-0025850/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025850/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/fP/MD5E-s25039--4b99213319feb607febc2ef523f75687.nii.gz/MD5E-s25039--4b99213319feb607febc2ef523f75687.nii.gz

SWU_4/sub-0025850/ses-1/mri/aal3_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025850/ses-1/mri/aal3_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/12/MD5E-s176460--f8df3c2a4189fbee287210cb26626dc3.nii.gz/MD5E-s176460--f8df3c2a4189fbee287210cb26626dc3.nii.gz

SWU_4/sub-0025850/ses-1/mri/anatomy3_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025850/ses-1/mri/anatomy3_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/fK/MD5E-s126287--e81e8b2aec069ecd6b61f17b9d5aca6b.nii.gz/MD5E-s126287--e81e8b2aec069ecd6b61f17b9d5aca6b.nii.gz

SWU_4/sub-0025850/ses-1/mri/anon_misub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/VJ/MD5E-s8756157--df3149ffe5c78f1167058cc1867e934e.nii.gz/MD5E-s8756157--df3149ffe5c78f1167058cc1867e934e.nii.gz

SWU_4/sub-0025850/ses-1/mri/anon_msub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/GK/MD5E-s10669753--0523b61952ee43dcbef2c454c3815d16.nii.gz/MD5E-s10669753--0523b61952ee43dcbef2c454c3815d16.nii.gz

SWU_4/sub-0025850/ses-1/mri/cat_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/8J/MD5E-s94412--6bea802acf32ac0555395b735fabe3d4.nii.gz/MD5E-s94412--6bea802acf32ac0555395b735fabe3d4.nii.gz

SWU_4/sub-0025850/ses-1/mri/cobra_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025850/ses-1/mri/cobra_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/3p/MD5E-s47336--0d45397c0b96555bcc73d2c1d769935c.nii.gz/MD5E-s47336--0d45397c0b96555bcc73d2c1d769935c.nii.gz

SWU_4/sub-0025850/ses-1/mri/hammers_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025850/ses-1/mri/hammers_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/v8/MD5E-s137655--4abc2250e7918bc52e89c479a6750f4c.nii.gz/MD5E-s137655--4abc2250e7918bc52e89c479a6750f4c.nii.gz

SWU_4/sub-0025850/ses-1/mri/ibsr_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025850/ses-1/mri/ibsr_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/fM/MD5E-s145330--070b6c7022b234043c9eeeb35d29bc66.nii.gz/MD5E-s145330--070b6c7022b234043c9eeeb35d29bc66.nii.gz

SWU_4/sub-0025850/ses-1/mri/it_sub-0025850_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/25/MD5E-s284--b8248aaba22c67b4cdde146c8d3be71a.mat/MD5E-s284--b8248aaba22c67b4cdde146c8d3be71a.mat

SWU_4/sub-0025850/ses-1/mri/it_sub-0025850_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/WW/MD5E-s284--767dde6d406d03008593c8c480635400.mat/MD5E-s284--767dde6d406d03008593c8c480635400.mat

SWU_4/sub-0025850/ses-1/mri/iy_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/5v/MD5E-s41508108--ae81ef43079f12aa528a8bacc2351cf1.nii.gz/MD5E-s41508108--ae81ef43079f12aa528a8bacc2351cf1.nii.gz

SWU_4/sub-0025850/ses-1/mri/julichbrain_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025850/ses-1/mri/julichbrain_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/8J/MD5E-s183173--3e144b41e4e7fc38c571f6cb0ba78394.nii.gz/MD5E-s183173--3e144b41e4e7fc38c571f6cb0ba78394.nii.gz

SWU_4/sub-0025850/ses-1/mri/lpba40_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025850/ses-1/mri/lpba40_sub-0025850_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6M/GV/MD5E-s135170--a9190541d08cc4208f1b646687b30558.nii.gz/MD5E-s135170--a9190541d08cc4208f1b646687b30558.nii.gz

SWU_4/sub-0025850/ses-1/mri/m0wp1sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/74/MD5E-s2574939--0c8cb311c457f93e89e10fc3eeae3d76.nii.gz/MD5E-s2574939--0c8cb311c457f93e89e10fc3eeae3d76.nii.gz

SWU_4/sub-0025850/ses-1/mri/m0wp2sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/09/82/MD5E-s2302497--1b00db15cdd35b0b206881f22c48697d.nii.gz/MD5E-s2302497--1b00db15cdd35b0b206881f22c48697d.nii.gz

SWU_4/sub-0025850/ses-1/mri/m0wp3sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/FX/MD5E-s2519520--a2c72035ffc7920efb0ff0c9a0654060.nii.gz/MD5E-s2519520--a2c72035ffc7920efb0ff0c9a0654060.nii.gz

SWU_4/sub-0025850/ses-1/mri/mori_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025850/ses-1/mri/mori_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/pg/MD5E-s162516--25850d2d64225460e190af2f9e26a2c8.nii.gz/MD5E-s162516--25850d2d64225460e190af2f9e26a2c8.nii.gz

SWU_4/sub-0025850/ses-1/mri/mwp1sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/mri/mwp2sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/42/MD5E-s2306589--04dcdc36b987cddd863b95a62203083d.nii.gz/MD5E-s2306589--04dcdc36b987cddd863b95a62203083d.nii.gz

SWU_4/sub-0025850/ses-1/mri/mwp3sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/mri/neuromorphometrics_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025850/ses-1/mri/neuromorphometrics_sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/mri/p0sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/vx/MD5E-s562893--d564d7befc4cb24e6b6b6f73127977e0.nii.gz/MD5E-s562893--d564d7befc4cb24e6b6b6f73127977e0.nii.gz

SWU_4/sub-0025850/ses-1/mri/p1sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/mri/p2sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/mri/p3sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/mri/rp1sub-0025850_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025850/ses-1/mri/rp2sub-0025850_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025850/ses-1/mri/rp3sub-0025850_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025850/ses-1/mri/t_sub-0025850_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025850/ses-1/mri/t_sub-0025850_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025850/ses-1/mri/thalamus_sub-0025850_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025850/ses-1/mri/thalamus_sub-0025850_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025850/ses-1/mri/wj_sub-0025850_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025850/ses-1/surf/lh.area.sub-0025850_ses-1_run-1_T1w

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SWU_4/sub-0025850/ses-1/surf/lh.edgemap32k.sub-0025850_ses-1_run-1_T1w.mat

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