[DATALAD RUNCMD] Compute SWU_1/sub-0027206/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027206/ses-3/anat/sub-0027206_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027206/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027206/ses-3/label/catROI_sub-0027206_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/K6/MD5E-s61205--0047abd522a4d4ad14c13d3729ebaf49.mat/MD5E-s61205--0047abd522a4d4ad14c13d3729ebaf49.mat

SWU_1/sub-0027206/ses-3/label/catROI_sub-0027206_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/WX/MD5E-s188833--a288b5d7dabae2fb2c16bc502f1a6672.xml/MD5E-s188833--a288b5d7dabae2fb2c16bc502f1a6672.xml

SWU_1/sub-0027206/ses-3/label/catROI_sub-0027206_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5P/0J/MD5E-s61167--e08f53a42a68b55c7dba39ef8ef8c22c.mat/MD5E-s61167--e08f53a42a68b55c7dba39ef8ef8c22c.mat

SWU_1/sub-0027206/ses-3/label/catROI_sub-0027206_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/58/PJ/MD5E-s188735--5ba1698077db5dcbe9a976d76ec098cf.xml/MD5E-s188735--5ba1698077db5dcbe9a976d76ec098cf.xml

SWU_1/sub-0027206/ses-3/label/catROIs_sub-0027206_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/JM/MD5E-s120133--caf32b3a72e6fb83a532749799895868.mat/MD5E-s120133--caf32b3a72e6fb83a532749799895868.mat

SWU_1/sub-0027206/ses-3/label/catROIs_sub-0027206_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/3v/MD5E-s332072--2cdd7049454a6ebf588dc08ed982757d.xml/MD5E-s332072--2cdd7049454a6ebf588dc08ed982757d.xml

SWU_1/sub-0027206/ses-3/label/catROIs_sub-0027206_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FF/xZ/MD5E-s120142--531214712486df871d1d38b40f463cff.mat/MD5E-s120142--531214712486df871d1d38b40f463cff.mat

SWU_1/sub-0027206/ses-3/label/catROIs_sub-0027206_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/55/6g/MD5E-s332191--e98aa25b909a98827e417f47b0193336.xml/MD5E-s332191--e98aa25b909a98827e417f47b0193336.xml

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M0/j7/MD5E-s165876--d1c46bdc04ccc897b2ae314b05732ce8.nii.gz/MD5E-s165876--d1c46bdc04ccc897b2ae314b05732ce8.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VQ/1Z/MD5E-s166930--a988813c654cdd0d4f923fe46386501b.nii.gz/MD5E-s166930--a988813c654cdd0d4f923fe46386501b.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/9x/MD5E-s184785--ba7b01c07f7c052ff5eb06ce2730f8b0.nii.gz/MD5E-s184785--ba7b01c07f7c052ff5eb06ce2730f8b0.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kZ/KW/MD5E-s186178--99d36d1eff3f921ff8f40ad3d300f11f.nii.gz/MD5E-s186178--99d36d1eff3f921ff8f40ad3d300f11f.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/pv/MD5E-s249462--6072d9ed503d188712393ca60f595c5f.nii.gz/MD5E-s249462--6072d9ed503d188712393ca60f595c5f.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5Q/3W/MD5E-s250950--167cc977d6cb06c8ad1064be4e35690a.nii.gz/MD5E-s250950--167cc977d6cb06c8ad1064be4e35690a.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/jg/MD5E-s276870--6d36d2923594f23fa10082334bd36b57.nii.gz/MD5E-s276870--6d36d2923594f23fa10082334bd36b57.nii.gz

SWU_1/sub-0027206/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gW/FQ/MD5E-s277767--5c8a1230960c5f8281345d24eab3bbdf.nii.gz/MD5E-s277767--5c8a1230960c5f8281345d24eab3bbdf.nii.gz

SWU_1/sub-0027206/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/8V/MD5E-s25488--cb427bf14e773379f8fab5a065c32186.nii.gz/MD5E-s25488--cb427bf14e773379f8fab5a065c32186.nii.gz

SWU_1/sub-0027206/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kV/Pg/MD5E-s25390--fdd3c0fbf0468bd1bec12632ee1fd156.nii.gz/MD5E-s25390--fdd3c0fbf0468bd1bec12632ee1fd156.nii.gz

SWU_1/sub-0027206/ses-3/mri/aal3_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/F4/MD5E-s186855--dac0099b8e2974cf61b260c5070617d0.nii.gz/MD5E-s186855--dac0099b8e2974cf61b260c5070617d0.nii.gz

SWU_1/sub-0027206/ses-3/mri/aal3_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3m/jj/MD5E-s187638--360594bafc9006ddde3ece6ea55df688.nii.gz/MD5E-s187638--360594bafc9006ddde3ece6ea55df688.nii.gz

SWU_1/sub-0027206/ses-3/mri/anatomy3_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/0z/MD5E-s135941--a6e5a24cd54bc5df71f9cc0fa266d394.nii.gz/MD5E-s135941--a6e5a24cd54bc5df71f9cc0fa266d394.nii.gz

SWU_1/sub-0027206/ses-3/mri/anatomy3_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P1/gp/MD5E-s136586--6f4fedd4c614f228be6237fb3092a0c5.nii.gz/MD5E-s136586--6f4fedd4c614f228be6237fb3092a0c5.nii.gz

SWU_1/sub-0027206/ses-3/mri/anon_misub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/anon_misub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zQ/9F/MD5E-s7778123--dcc86c91cafeed5765c80ff846f937bf.nii.gz/MD5E-s7778123--dcc86c91cafeed5765c80ff846f937bf.nii.gz

SWU_1/sub-0027206/ses-3/mri/anon_msub-0027206_ses-3_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/GX/8m/MD5E-s7581540--4609f5e37871a5fe1794b5a97da94732.nii.gz/MD5E-s7581540--4609f5e37871a5fe1794b5a97da94732.nii.gz

SWU_1/sub-0027206/ses-3/mri/anon_msub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027206/ses-3/mri/cat_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/kf/MD5E-s99906--6243f92bc56675d3fc778a4c4bca1baf.nii.gz/MD5E-s99906--6243f92bc56675d3fc778a4c4bca1baf.nii.gz

SWU_1/sub-0027206/ses-3/mri/cat_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q2/1X/MD5E-s100059--5e4b1ecd219398abcd24771cdee94301.nii.gz/MD5E-s100059--5e4b1ecd219398abcd24771cdee94301.nii.gz

SWU_1/sub-0027206/ses-3/mri/cobra_sub-0027206_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027206/ses-3/mri/cobra_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027206/ses-3/mri/hammers_sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/hammers_sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/ibsr_sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/ibsr_sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/it_sub-0027206_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/vW/MD5E-s284--fd7d824f56dfbddd5431fffe8f532730.mat/MD5E-s284--fd7d824f56dfbddd5431fffe8f532730.mat

SWU_1/sub-0027206/ses-3/mri/it_sub-0027206_ses-3_run-1_T1w_rigid_reorient.mat

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SWU_1/sub-0027206/ses-3/mri/it_sub-0027206_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027206/ses-3/mri/it_sub-0027206_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027206/ses-3/mri/iy_sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/iy_sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/julichbrain_sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/julichbrain_sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/lpba40_sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/lpba40_sub-0027206_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027206/ses-3/mri/m0wp1sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/m0wp1sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/m0wp2sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/m0wp2sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/m0wp3sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/m0wp3sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/mori_sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/mori_sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/mwp1sub-0027206_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/mwp1sub-0027206_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027206/ses-3/mri/mwp2sub-0027206_ses-3_run-1_T1w.nii.gz

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