[DATALAD RUNCMD] Compute IPCAS_1/sub-0025505/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_1/sub-0025505/ses-1/anat/sub-0025505_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_1/sub-0025505/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_1/sub-0025505/ses-1/label/catROI_sub-0025505_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/90/MD5E-s61243--f7048a75197c69064ac6070812985b7e.mat/MD5E-s61243--f7048a75197c69064ac6070812985b7e.mat

IPCAS_1/sub-0025505/ses-1/label/catROI_sub-0025505_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/fV/MD5E-s188991--0d5503442c3035a62ef768d3f61130a2.xml/MD5E-s188991--0d5503442c3035a62ef768d3f61130a2.xml

IPCAS_1/sub-0025505/ses-1/label/catROIs_sub-0025505_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/GX/MD5E-s120139--4400e3ed25921d0947c7d4fb622d458d.mat/MD5E-s120139--4400e3ed25921d0947c7d4fb622d458d.mat

IPCAS_1/sub-0025505/ses-1/label/catROIs_sub-0025505_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/m5/MD5E-s332155--feffc10188d18ff8eacd4bf383dfb924.xml/MD5E-s332155--feffc10188d18ff8eacd4bf383dfb924.xml

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/Mg/MD5E-s137989--d1afe7586ebc01bd3cb19becc0de7447.nii.gz/MD5E-s137989--d1afe7586ebc01bd3cb19becc0de7447.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/6J/MD5E-s152961--57e258ad4beb1e86da548d9c9376ccef.nii.gz/MD5E-s152961--57e258ad4beb1e86da548d9c9376ccef.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/kM/MD5E-s206644--d72e0a11217f042437f63d061f9fc75a.nii.gz/MD5E-s206644--d72e0a11217f042437f63d061f9fc75a.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_1/sub-0025505/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/2Z/MD5E-s228211--a19b622794c22dba087b8ea8bd2a684f.nii.gz/MD5E-s228211--a19b622794c22dba087b8ea8bd2a684f.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/kG/MD5E-s18608--48623fc19b9334caa7f79083f2177a0f.nii.gz/MD5E-s18608--48623fc19b9334caa7f79083f2177a0f.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/aal3_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/aal3_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/4G/MD5E-s153813--bfd74f7d50fe756dd3edfa7405f6733d.nii.gz/MD5E-s153813--bfd74f7d50fe756dd3edfa7405f6733d.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/anatomy3_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/anatomy3_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/pz/MD5E-s110741--e4466c9f0a3cc51dd7ef416aab8df158.nii.gz/MD5E-s110741--e4466c9f0a3cc51dd7ef416aab8df158.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/anon_misub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/jP/MD5E-s3384537--dc8991bcbd1d1e146197dfcb03009a44.nii.gz/MD5E-s3384537--dc8991bcbd1d1e146197dfcb03009a44.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/anon_msub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/mX/MD5E-s7092858--908e9fcfdb5218322eb7f076cccc95d4.nii.gz/MD5E-s7092858--908e9fcfdb5218322eb7f076cccc95d4.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/cat_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/cobra_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_1/sub-0025505/ses-1/mri/cobra_sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/hammers_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_1/sub-0025505/ses-1/mri/hammers_sub-0025505_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/zm/Vf/MD5E-s122041--92da9517db1c2e310dfd623772f1efd1.nii.gz/MD5E-s122041--92da9517db1c2e310dfd623772f1efd1.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/ibsr_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_1/sub-0025505/ses-1/mri/ibsr_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/it_sub-0025505_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/8F/MD5E-s283--32d684eac82545440690c3b1ff089285.mat/MD5E-s283--32d684eac82545440690c3b1ff089285.mat

IPCAS_1/sub-0025505/ses-1/mri/it_sub-0025505_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/kP/MD5E-s285--ba555d5bde1c5ce0da49540a32025144.mat/MD5E-s285--ba555d5bde1c5ce0da49540a32025144.mat

IPCAS_1/sub-0025505/ses-1/mri/iy_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/v3/MD5E-s32865137--0fce5bd426bcbff38eec195e20e0a91b.nii.gz/MD5E-s32865137--0fce5bd426bcbff38eec195e20e0a91b.nii.gz

IPCAS_1/sub-0025505/ses-1/mri/julichbrain_sub-0025505_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/julichbrain_sub-0025505_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025505/ses-1/mri/lpba40_sub-0025505_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025505/ses-1/mri/lpba40_sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/m0wp1sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/m0wp2sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/m0wp3sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/mori_sub-0025505_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025505/ses-1/mri/mori_sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/mwp1sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/mwp2sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/mwp3sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/neuromorphometrics_sub-0025505_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025505/ses-1/mri/neuromorphometrics_sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/p0sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/p1sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/p2sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/p3sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/rp1sub-0025505_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/rp2sub-0025505_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/rp3sub-0025505_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/t_sub-0025505_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_1/sub-0025505/ses-1/mri/t_sub-0025505_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_1/sub-0025505/ses-1/mri/thalamus_sub-0025505_ses-1_run-1_T1w.csv

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IPCAS_1/sub-0025505/ses-1/mri/thalamus_sub-0025505_ses-1_run-1_T1w.nii.gz

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IPCAS_1/sub-0025505/ses-1/mri/wj_sub-0025505_ses-1_run-1_T1w.nii.gz

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