[DATALAD RUNCMD] Compute SWU_4/sub-0025761/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025761/ses-1/anat/sub-0025761_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025761/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025761/ses-1/label/catROI_sub-0025761_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/79/MD5E-s61252--69b3a199893341d2b6e33dba3367c389.mat/MD5E-s61252--69b3a199893341d2b6e33dba3367c389.mat

SWU_4/sub-0025761/ses-1/label/catROI_sub-0025761_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/Jk/MD5E-s188573--84aa3028392bfaa568e00a9e22149117.xml/MD5E-s188573--84aa3028392bfaa568e00a9e22149117.xml

SWU_4/sub-0025761/ses-1/label/catROIs_sub-0025761_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/Wj/MD5E-s120100--e995035ec96d08d7ba5cc6d6671d76a9.mat/MD5E-s120100--e995035ec96d08d7ba5cc6d6671d76a9.mat

SWU_4/sub-0025761/ses-1/label/catROIs_sub-0025761_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M0/7f/MD5E-s332098--840d1c1f291dbd17c013d094c307c766.xml/MD5E-s332098--840d1c1f291dbd17c013d094c307c766.xml

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/xX/MD5E-s177756--87d2c516adf54eb8b49be73ca06b5c7d.nii.gz/MD5E-s177756--87d2c516adf54eb8b49be73ca06b5c7d.nii.gz

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/vX/MD5E-s198320--3a8526af5e091fa4c355d9fbc3b8ef92.nii.gz/MD5E-s198320--3a8526af5e091fa4c355d9fbc3b8ef92.nii.gz

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/pp/MD5E-s267492--549f861850d90ba369ade28e94f521ea.nii.gz/MD5E-s267492--549f861850d90ba369ade28e94f521ea.nii.gz

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025761/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/wg/MD5E-s296149--c3f257d70aeef9254a616a0e89c7ed6f.nii.gz/MD5E-s296149--c3f257d70aeef9254a616a0e89c7ed6f.nii.gz

SWU_4/sub-0025761/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025761/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/0F/MD5E-s25946--fab613e6b64288231dbd5f49032ac64b.nii.gz/MD5E-s25946--fab613e6b64288231dbd5f49032ac64b.nii.gz

SWU_4/sub-0025761/ses-1/mri/aal3_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025761/ses-1/mri/aal3_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/X3/MD5E-s200351--b341175dfcf7c028eaa124839e748d8d.nii.gz/MD5E-s200351--b341175dfcf7c028eaa124839e748d8d.nii.gz

SWU_4/sub-0025761/ses-1/mri/anatomy3_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025761/ses-1/mri/anatomy3_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/PZ/MD5E-s144649--2027c432bb7b1286d653351d9f7c0715.nii.gz/MD5E-s144649--2027c432bb7b1286d653351d9f7c0715.nii.gz

SWU_4/sub-0025761/ses-1/mri/anon_misub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/63/51/MD5E-s8992013--00b3a1e5406a9ab523e39bb771a94863.nii.gz/MD5E-s8992013--00b3a1e5406a9ab523e39bb771a94863.nii.gz

SWU_4/sub-0025761/ses-1/mri/anon_msub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/pw/MD5E-s8491862--0c71c2c6ab197768c57102804e3d7cc4.nii.gz/MD5E-s8491862--0c71c2c6ab197768c57102804e3d7cc4.nii.gz

SWU_4/sub-0025761/ses-1/mri/cat_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/pQ/MD5E-s105207--5efafc2a4427306a5e34a285970d5011.nii.gz/MD5E-s105207--5efafc2a4427306a5e34a285970d5011.nii.gz

SWU_4/sub-0025761/ses-1/mri/cobra_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025761/ses-1/mri/cobra_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/X8/MD5E-s50584--aa71da552adc02e084ad6343c022c565.nii.gz/MD5E-s50584--aa71da552adc02e084ad6343c022c565.nii.gz

SWU_4/sub-0025761/ses-1/mri/hammers_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025761/ses-1/mri/hammers_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/fq/MD5E-s156100--b4653c79ee0f3383e7726457b4eee989.nii.gz/MD5E-s156100--b4653c79ee0f3383e7726457b4eee989.nii.gz

SWU_4/sub-0025761/ses-1/mri/ibsr_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025761/ses-1/mri/ibsr_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/7p/MD5E-s165180--650bd101593dd033ba679b410d48a949.nii.gz/MD5E-s165180--650bd101593dd033ba679b410d48a949.nii.gz

SWU_4/sub-0025761/ses-1/mri/it_sub-0025761_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/8P/MD5E-s283--df194b250cd6220a7b99343dc1a1a226.mat/MD5E-s283--df194b250cd6220a7b99343dc1a1a226.mat

SWU_4/sub-0025761/ses-1/mri/it_sub-0025761_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/F3/MD5E-s282--3a387160b2e9eaa1d3ab24c9bee308d0.mat/MD5E-s282--3a387160b2e9eaa1d3ab24c9bee308d0.mat

SWU_4/sub-0025761/ses-1/mri/iy_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/6Q/MD5E-s49678943--8671046292a77c70504a72e7d4d4512b.nii.gz/MD5E-s49678943--8671046292a77c70504a72e7d4d4512b.nii.gz

SWU_4/sub-0025761/ses-1/mri/julichbrain_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025761/ses-1/mri/julichbrain_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/wz/MD5E-s213317--1f2ab020aa0791f2f968ad9e877f326c.nii.gz/MD5E-s213317--1f2ab020aa0791f2f968ad9e877f326c.nii.gz

SWU_4/sub-0025761/ses-1/mri/lpba40_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025761/ses-1/mri/lpba40_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/0P/MD5E-s152366--6473ae94dade148e4ffcfa6ef2f443f1.nii.gz/MD5E-s152366--6473ae94dade148e4ffcfa6ef2f443f1.nii.gz

SWU_4/sub-0025761/ses-1/mri/m0wp1sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/zf/MD5E-s2580444--a5a931feae06ef88f0f2695b6e16ff29.nii.gz/MD5E-s2580444--a5a931feae06ef88f0f2695b6e16ff29.nii.gz

SWU_4/sub-0025761/ses-1/mri/m0wp2sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/0q/MD5E-s2318734--2087aad01b9611c9f06e373eb7434d21.nii.gz/MD5E-s2318734--2087aad01b9611c9f06e373eb7434d21.nii.gz

SWU_4/sub-0025761/ses-1/mri/m0wp3sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/J8/MD5E-s2466869--201807cb39993f3477acc23e857004b9.nii.gz/MD5E-s2466869--201807cb39993f3477acc23e857004b9.nii.gz

SWU_4/sub-0025761/ses-1/mri/mori_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025761/ses-1/mri/mori_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/fv/MD5E-s185263--13accdea28685334f40bae5cd09d3af7.nii.gz/MD5E-s185263--13accdea28685334f40bae5cd09d3af7.nii.gz

SWU_4/sub-0025761/ses-1/mri/mwp1sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/Fm/MD5E-s2583145--9e51e80e251eaefde6913dcf0b7fd844.nii.gz/MD5E-s2583145--9e51e80e251eaefde6913dcf0b7fd844.nii.gz

SWU_4/sub-0025761/ses-1/mri/mwp2sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/MG/MD5E-s2316554--dfbbd6a786fefa4b974b8f19fb76e56c.nii.gz/MD5E-s2316554--dfbbd6a786fefa4b974b8f19fb76e56c.nii.gz

SWU_4/sub-0025761/ses-1/mri/mwp3sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5K/5z/MD5E-s2465420--37b6f9b2b554eab109c1377379be4455.nii.gz/MD5E-s2465420--37b6f9b2b554eab109c1377379be4455.nii.gz

SWU_4/sub-0025761/ses-1/mri/neuromorphometrics_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025761/ses-1/mri/neuromorphometrics_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/0M/MD5E-s212700--44df6f78e9f60dddc5b0f6d40fb8f395.nii.gz/MD5E-s212700--44df6f78e9f60dddc5b0f6d40fb8f395.nii.gz

SWU_4/sub-0025761/ses-1/mri/p0sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/F2/MD5E-s676708--8104439bfa3e557820d8c8795b4611ec.nii.gz/MD5E-s676708--8104439bfa3e557820d8c8795b4611ec.nii.gz

SWU_4/sub-0025761/ses-1/mri/p1sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/20/MD5E-s722266--45595022d6276414536a689a7907d1f3.nii.gz/MD5E-s722266--45595022d6276414536a689a7907d1f3.nii.gz

SWU_4/sub-0025761/ses-1/mri/p2sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/m4/MD5E-s482463--827ed4d715241b4d2e770d53772e304f.nii.gz/MD5E-s482463--827ed4d715241b4d2e770d53772e304f.nii.gz

SWU_4/sub-0025761/ses-1/mri/p3sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025761/ses-1/mri/rp1sub-0025761_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/Kg/MD5E-s451754--12b9a358091bfa605c1f86f8519072e8.nii.gz/MD5E-s451754--12b9a358091bfa605c1f86f8519072e8.nii.gz

SWU_4/sub-0025761/ses-1/mri/rp2sub-0025761_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025761/ses-1/mri/rp3sub-0025761_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025761/ses-1/mri/t_sub-0025761_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025761/ses-1/mri/t_sub-0025761_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/7f/MD5E-s284--8a41b8827c8e6bc8818bc5d1520175be.mat/MD5E-s284--8a41b8827c8e6bc8818bc5d1520175be.mat

SWU_4/sub-0025761/ses-1/mri/thalamus_sub-0025761_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025761/ses-1/mri/thalamus_sub-0025761_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/WP/MD5E-s16560--349879ac1751081cd85c7ec2fca9c2b9.nii.gz/MD5E-s16560--349879ac1751081cd85c7ec2fca9c2b9.nii.gz

SWU_4/sub-0025761/ses-1/mri/wj_sub-0025761_ses-1_run-1_T1w.nii.gz

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