[DATALAD RUNCMD] Compute SWU_4/sub-0025844/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025844/ses-2/anat/sub-0025844_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025844/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025844/ses-2/label/catROI_sub-0025844_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/WW/MD5E-s61264--430905fbfe985166a8e26995d0d00883.mat/MD5E-s61264--430905fbfe985166a8e26995d0d00883.mat

SWU_4/sub-0025844/ses-2/label/catROI_sub-0025844_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/g1/MD5E-s188975--9b127fbb04c751ba224e4f127ee92ca1.xml/MD5E-s188975--9b127fbb04c751ba224e4f127ee92ca1.xml

SWU_4/sub-0025844/ses-2/label/catROIs_sub-0025844_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/F6/MD5E-s120064--4dd0e3ce192030dfc8236cb04daad15f.mat/MD5E-s120064--4dd0e3ce192030dfc8236cb04daad15f.mat

SWU_4/sub-0025844/ses-2/label/catROIs_sub-0025844_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/3x/MD5E-s332154--fc248ee44749628f788a0acd53e9f81d.xml/MD5E-s332154--fc248ee44749628f788a0acd53e9f81d.xml

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/W8/MD5E-s169952--aac21aa2c2de285bb70e9ca4bd54bf53.nii.gz/MD5E-s169952--aac21aa2c2de285bb70e9ca4bd54bf53.nii.gz

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/ZG/MD5E-s189132--cf7b61ef99f307c20912787b0a9d9701.nii.gz/MD5E-s189132--cf7b61ef99f307c20912787b0a9d9701.nii.gz

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/71/MD5E-s256000--36901f7e14cb65712dae1ef34fe3f47c.nii.gz/MD5E-s256000--36901f7e14cb65712dae1ef34fe3f47c.nii.gz

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025844/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/fM/MD5E-s283244--edcee59b997db9629e1a60f6710e3d79.nii.gz/MD5E-s283244--edcee59b997db9629e1a60f6710e3d79.nii.gz

SWU_4/sub-0025844/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025844/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/Vz/MD5E-s24860--0a807dea4dd7f88c25ead1b550b3a3fe.nii.gz/MD5E-s24860--0a807dea4dd7f88c25ead1b550b3a3fe.nii.gz

SWU_4/sub-0025844/ses-2/mri/aal3_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025844/ses-2/mri/aal3_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/9w/MD5E-s188725--527e5dc8de931831a392feb4c70c8591.nii.gz/MD5E-s188725--527e5dc8de931831a392feb4c70c8591.nii.gz

SWU_4/sub-0025844/ses-2/mri/anatomy3_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025844/ses-2/mri/anatomy3_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W4/vm/MD5E-s139432--4db87e6ff6472e121b3631c17d07b496.nii.gz/MD5E-s139432--4db87e6ff6472e121b3631c17d07b496.nii.gz

SWU_4/sub-0025844/ses-2/mri/anon_misub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/WK/MD5E-s9465034--460e7443db773f4c1ab98a5df6fe2829.nii.gz/MD5E-s9465034--460e7443db773f4c1ab98a5df6fe2829.nii.gz

SWU_4/sub-0025844/ses-2/mri/anon_msub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/0F/MD5E-s10874827--c82edeed4f423316d99f9fe2de452fb5.nii.gz/MD5E-s10874827--c82edeed4f423316d99f9fe2de452fb5.nii.gz

SWU_4/sub-0025844/ses-2/mri/cat_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/JV/MD5E-s103320--13d352e9100e6e9632508177f6443e66.nii.gz/MD5E-s103320--13d352e9100e6e9632508177f6443e66.nii.gz

SWU_4/sub-0025844/ses-2/mri/cobra_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025844/ses-2/mri/cobra_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/ZM/MD5E-s47785--4ac64b3702ff175efd34ebdb33021200.nii.gz/MD5E-s47785--4ac64b3702ff175efd34ebdb33021200.nii.gz

SWU_4/sub-0025844/ses-2/mri/hammers_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025844/ses-2/mri/hammers_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/Q1/MD5E-s150541--d8306a4d07f35840388e31704fd9df04.nii.gz/MD5E-s150541--d8306a4d07f35840388e31704fd9df04.nii.gz

SWU_4/sub-0025844/ses-2/mri/ibsr_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025844/ses-2/mri/ibsr_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/MZ/MD5E-s159345--9ddf674d1a695a2360da763b7269b456.nii.gz/MD5E-s159345--9ddf674d1a695a2360da763b7269b456.nii.gz

SWU_4/sub-0025844/ses-2/mri/it_sub-0025844_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/36/MD5E-s282--f91ca594c342e77f3da2d4f8d9c6effe.mat/MD5E-s282--f91ca594c342e77f3da2d4f8d9c6effe.mat

SWU_4/sub-0025844/ses-2/mri/it_sub-0025844_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/QP/MD5E-s283--ad315d7b12ad25b2242f150df6b4c226.mat/MD5E-s283--ad315d7b12ad25b2242f150df6b4c226.mat

SWU_4/sub-0025844/ses-2/mri/iy_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gW/49/MD5E-s46045677--71dc56ee5b09f3b334a3fd8d866d48e7.nii.gz/MD5E-s46045677--71dc56ee5b09f3b334a3fd8d866d48e7.nii.gz

SWU_4/sub-0025844/ses-2/mri/julichbrain_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025844/ses-2/mri/julichbrain_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/X3/MD5E-s203636--e83626e37ef45dc064e2dbcfa277de62.nii.gz/MD5E-s203636--e83626e37ef45dc064e2dbcfa277de62.nii.gz

SWU_4/sub-0025844/ses-2/mri/lpba40_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025844/ses-2/mri/lpba40_sub-0025844_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/20/FP/MD5E-s146544--98b30fc1664450841752f3e825c6b56a.nii.gz/MD5E-s146544--98b30fc1664450841752f3e825c6b56a.nii.gz

SWU_4/sub-0025844/ses-2/mri/m0wp1sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/9K/MD5E-s2576777--ef6742ea56e6cfe216fdc81f1714a04e.nii.gz/MD5E-s2576777--ef6742ea56e6cfe216fdc81f1714a04e.nii.gz

SWU_4/sub-0025844/ses-2/mri/m0wp2sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/8W/MD5E-s2301428--aaf8cc22f22e2b2bc8060d4101975fbf.nii.gz/MD5E-s2301428--aaf8cc22f22e2b2bc8060d4101975fbf.nii.gz

SWU_4/sub-0025844/ses-2/mri/m0wp3sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/q7/MD5E-s2600445--2e7bf16a8d9075ea7c7a2860a1f11a0a.nii.gz/MD5E-s2600445--2e7bf16a8d9075ea7c7a2860a1f11a0a.nii.gz

SWU_4/sub-0025844/ses-2/mri/mori_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025844/ses-2/mri/mori_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/x3/MD5E-s175134--0173cf5bd9d0c5e9373b51de4450f297.nii.gz/MD5E-s175134--0173cf5bd9d0c5e9373b51de4450f297.nii.gz

SWU_4/sub-0025844/ses-2/mri/mwp1sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/75/MD5E-s2580800--8201341c0147950451ca995e4871fd56.nii.gz/MD5E-s2580800--8201341c0147950451ca995e4871fd56.nii.gz

SWU_4/sub-0025844/ses-2/mri/mwp2sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/9j/MD5E-s2304501--44e994daa829d15cb2889796dd6542f0.nii.gz/MD5E-s2304501--44e994daa829d15cb2889796dd6542f0.nii.gz

SWU_4/sub-0025844/ses-2/mri/mwp3sub-0025844_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025844/ses-2/mri/neuromorphometrics_sub-0025844_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025844/ses-2/mri/neuromorphometrics_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025844/ses-2/mri/p0sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FF/FG/MD5E-s664215--103a4a063d81280464ed6ca091a870ce.nii.gz/MD5E-s664215--103a4a063d81280464ed6ca091a870ce.nii.gz

SWU_4/sub-0025844/ses-2/mri/p1sub-0025844_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025844/ses-2/mri/p2sub-0025844_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025844/ses-2/mri/p3sub-0025844_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025844/ses-2/mri/rp1sub-0025844_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025844/ses-2/mri/rp2sub-0025844_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025844/ses-2/mri/rp3sub-0025844_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025844/ses-2/mri/t_sub-0025844_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025844/ses-2/mri/t_sub-0025844_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025844/ses-2/mri/thalamus_sub-0025844_ses-2_run-1_T1w.csv

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SWU_4/sub-0025844/ses-2/mri/thalamus_sub-0025844_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025844/ses-2/mri/wj_sub-0025844_ses-2_run-1_T1w.nii.gz

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