[DATALAD RUNCMD] Compute SWU_4/sub-0025757/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025757/ses-2/anat/sub-0025757_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025757/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025757/ses-2/label/catROI_sub-0025757_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/Q5/MD5E-s61361--a174f444a69bbee5b8b77d27f7a6cb82.mat/MD5E-s61361--a174f444a69bbee5b8b77d27f7a6cb82.mat

SWU_4/sub-0025757/ses-2/label/catROI_sub-0025757_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/5V/MD5E-s188596--5b34abe5a64ef0c0df7ffbe1d276dd60.xml/MD5E-s188596--5b34abe5a64ef0c0df7ffbe1d276dd60.xml

SWU_4/sub-0025757/ses-2/label/catROIs_sub-0025757_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/j4/MD5E-s120054--2dfc6d1ef770e85e0cda78e325a9e724.mat/MD5E-s120054--2dfc6d1ef770e85e0cda78e325a9e724.mat

SWU_4/sub-0025757/ses-2/label/catROIs_sub-0025757_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/0V/MD5E-s332118--58cb75367eac5c2c999d6bb01313f9b4.xml/MD5E-s332118--58cb75367eac5c2c999d6bb01313f9b4.xml

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/Fk/MD5E-s183277--b690cefe138c8ce3af39cfd44d0f9ce8.nii.gz/MD5E-s183277--b690cefe138c8ce3af39cfd44d0f9ce8.nii.gz

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/FJ/MD5E-s207141--9ac6ae98bf756568ade2dd7b6aa4a6cb.nii.gz/MD5E-s207141--9ac6ae98bf756568ade2dd7b6aa4a6cb.nii.gz

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/2W/MD5E-s277694--58430fedc8242eed9acfd92a51cf1280.nii.gz/MD5E-s277694--58430fedc8242eed9acfd92a51cf1280.nii.gz

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025757/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m7/mm/MD5E-s310086--c5875d1fc3cd4e357b554ed9dbdf401b.nii.gz/MD5E-s310086--c5875d1fc3cd4e357b554ed9dbdf401b.nii.gz

SWU_4/sub-0025757/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025757/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/Mj/MD5E-s25635--47ffc41379cc4535b04dd424b7856c2d.nii.gz/MD5E-s25635--47ffc41379cc4535b04dd424b7856c2d.nii.gz

SWU_4/sub-0025757/ses-2/mri/aal3_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025757/ses-2/mri/aal3_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/mW/MD5E-s206241--fa51d74c19b18ff30544da040bd4b37d.nii.gz/MD5E-s206241--fa51d74c19b18ff30544da040bd4b37d.nii.gz

SWU_4/sub-0025757/ses-2/mri/anatomy3_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025757/ses-2/mri/anatomy3_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/6w/MD5E-s153143--a3e496fec4a481ca4f04755eb1ff519d.nii.gz/MD5E-s153143--a3e496fec4a481ca4f04755eb1ff519d.nii.gz

SWU_4/sub-0025757/ses-2/mri/anon_misub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/zz/MD5E-s12215109--02b457d6a6df2dd2b1fdb4d99c2391f0.nii.gz/MD5E-s12215109--02b457d6a6df2dd2b1fdb4d99c2391f0.nii.gz

SWU_4/sub-0025757/ses-2/mri/anon_msub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/7j/MD5E-s12574165--d72ea94fc08b89f9024b4833e8c2fde7.nii.gz/MD5E-s12574165--d72ea94fc08b89f9024b4833e8c2fde7.nii.gz

SWU_4/sub-0025757/ses-2/mri/cat_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/Jp/MD5E-s110187--ab99427d723855fab4cc2709f7a14cc6.nii.gz/MD5E-s110187--ab99427d723855fab4cc2709f7a14cc6.nii.gz

SWU_4/sub-0025757/ses-2/mri/cobra_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025757/ses-2/mri/cobra_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WQ/9p/MD5E-s51292--eb9fbdc68de97a191637ed1dbaf7fac4.nii.gz/MD5E-s51292--eb9fbdc68de97a191637ed1dbaf7fac4.nii.gz

SWU_4/sub-0025757/ses-2/mri/hammers_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025757/ses-2/mri/hammers_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/W1/MD5E-s163522--94d01acce25c04adcc3cb72c174364db.nii.gz/MD5E-s163522--94d01acce25c04adcc3cb72c174364db.nii.gz

SWU_4/sub-0025757/ses-2/mri/ibsr_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025757/ses-2/mri/ibsr_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/F9/MD5E-s170873--7dd6c915c659aeeb2557d31f4c60f7a5.nii.gz/MD5E-s170873--7dd6c915c659aeeb2557d31f4c60f7a5.nii.gz

SWU_4/sub-0025757/ses-2/mri/it_sub-0025757_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/V1/MD5E-s282--12f001ee6af2d93766860904aa7cb28e.mat/MD5E-s282--12f001ee6af2d93766860904aa7cb28e.mat

SWU_4/sub-0025757/ses-2/mri/it_sub-0025757_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/f9/MD5E-s283--3784ed8fafd89a27b7e733b0e394c78f.mat/MD5E-s283--3784ed8fafd89a27b7e733b0e394c78f.mat

SWU_4/sub-0025757/ses-2/mri/iy_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/KM/MD5E-s53122594--8b1dea1e43174be5a8550b908294d311.nii.gz/MD5E-s53122594--8b1dea1e43174be5a8550b908294d311.nii.gz

SWU_4/sub-0025757/ses-2/mri/julichbrain_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025757/ses-2/mri/julichbrain_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/Kj/MD5E-s222626--8dbd0f95282b5397b893f259b557584b.nii.gz/MD5E-s222626--8dbd0f95282b5397b893f259b557584b.nii.gz

SWU_4/sub-0025757/ses-2/mri/lpba40_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025757/ses-2/mri/lpba40_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/9K/MD5E-s159676--60e365cd5bc49cc20a5e513b233efabd.nii.gz/MD5E-s159676--60e365cd5bc49cc20a5e513b233efabd.nii.gz

SWU_4/sub-0025757/ses-2/mri/m0wp1sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w2/7M/MD5E-s2587817--aea3ba2ac5c74f2f92494405bb50ffde.nii.gz/MD5E-s2587817--aea3ba2ac5c74f2f92494405bb50ffde.nii.gz

SWU_4/sub-0025757/ses-2/mri/m0wp2sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/Q6/MD5E-s2325987--227bc029fd8991cdf3022caf7ac90944.nii.gz/MD5E-s2325987--227bc029fd8991cdf3022caf7ac90944.nii.gz

SWU_4/sub-0025757/ses-2/mri/m0wp3sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/4f/MD5E-s2568189--e2cefc1d62dd20d8fb3e6273bed2a420.nii.gz/MD5E-s2568189--e2cefc1d62dd20d8fb3e6273bed2a420.nii.gz

SWU_4/sub-0025757/ses-2/mri/mori_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025757/ses-2/mri/mori_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/q0/MD5E-s187706--8cb772e5b7f0f149ebb3c8161993789b.nii.gz/MD5E-s187706--8cb772e5b7f0f149ebb3c8161993789b.nii.gz

SWU_4/sub-0025757/ses-2/mri/mwp1sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/Gq/MD5E-s2589004--c17365ccb590751d85c6f52c05849b2e.nii.gz/MD5E-s2589004--c17365ccb590751d85c6f52c05849b2e.nii.gz

SWU_4/sub-0025757/ses-2/mri/mwp2sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qg/52/MD5E-s2324472--6e17df2846176dcae2897fb3c7a83562.nii.gz/MD5E-s2324472--6e17df2846176dcae2897fb3c7a83562.nii.gz

SWU_4/sub-0025757/ses-2/mri/mwp3sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/76/MD5E-s2567886--e92a51e2f3d3aa7afb43c1225a4c70fb.nii.gz/MD5E-s2567886--e92a51e2f3d3aa7afb43c1225a4c70fb.nii.gz

SWU_4/sub-0025757/ses-2/mri/neuromorphometrics_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025757/ses-2/mri/neuromorphometrics_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/Mg/MD5E-s223692--dba348c4ae8ff6f6cc814321dd9ff56a.nii.gz/MD5E-s223692--dba348c4ae8ff6f6cc814321dd9ff56a.nii.gz

SWU_4/sub-0025757/ses-2/mri/p0sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/mQ/MD5E-s775560--3ad5032556f99183724ce1fd799f3151.nii.gz/MD5E-s775560--3ad5032556f99183724ce1fd799f3151.nii.gz

SWU_4/sub-0025757/ses-2/mri/p1sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/Z6/MD5E-s829360--8da074d14cbe3d1c1601bd9c7d81bc89.nii.gz/MD5E-s829360--8da074d14cbe3d1c1601bd9c7d81bc89.nii.gz

SWU_4/sub-0025757/ses-2/mri/p2sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/z6/MD5E-s534672--620bbd3e6231bbae5550d729ba2e4ec7.nii.gz/MD5E-s534672--620bbd3e6231bbae5550d729ba2e4ec7.nii.gz

SWU_4/sub-0025757/ses-2/mri/p3sub-0025757_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025757/ses-2/mri/rp1sub-0025757_ses-2_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/27/Wx/MD5E-s472595--a8e50a8f3ec8180c0118fc4d2240b119.nii.gz/MD5E-s472595--a8e50a8f3ec8180c0118fc4d2240b119.nii.gz

SWU_4/sub-0025757/ses-2/mri/rp2sub-0025757_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025757/ses-2/mri/rp3sub-0025757_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025757/ses-2/mri/t_sub-0025757_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025757/ses-2/mri/t_sub-0025757_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/ff/MD5E-s284--55dd486008b4016e0867326dae891890.mat/MD5E-s284--55dd486008b4016e0867326dae891890.mat

SWU_4/sub-0025757/ses-2/mri/thalamus_sub-0025757_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025757/ses-2/mri/thalamus_sub-0025757_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/0j/MD5E-s16780--43d1b5e78affffc3e3a96392ef64480f.nii.gz/MD5E-s16780--43d1b5e78affffc3e3a96392ef64480f.nii.gz

SWU_4/sub-0025757/ses-2/mri/wj_sub-0025757_ses-2_run-1_T1w.nii.gz

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