[DATALAD RUNCMD] Compute IPCAS_7/sub-0026046/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026046/ses-1/anat/sub-0026046_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026046/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026046/ses-1/label/catROI_sub-0026046_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/xX/MD5E-s61406--ec49ea195eedd1d76694b438dc6d8c42.mat/MD5E-s61406--ec49ea195eedd1d76694b438dc6d8c42.mat

IPCAS_7/sub-0026046/ses-1/label/catROI_sub-0026046_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/Px/MD5E-s188787--312fc3bb69efead27906bf5b86ccaec3.xml/MD5E-s188787--312fc3bb69efead27906bf5b86ccaec3.xml

IPCAS_7/sub-0026046/ses-1/label/catROIs_sub-0026046_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/8k/MD5E-s120047--dff4a547cfe538df1691b4777d709c00.mat/MD5E-s120047--dff4a547cfe538df1691b4777d709c00.mat

IPCAS_7/sub-0026046/ses-1/label/catROIs_sub-0026046_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/19/MD5E-s332129--f109045c2ad8cb24952b6b92f56177a1.xml/MD5E-s332129--f109045c2ad8cb24952b6b92f56177a1.xml

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/K9/MD5E-s178792--2d5d15f885b6ffe622d39e116dcf1552.nii.gz/MD5E-s178792--2d5d15f885b6ffe622d39e116dcf1552.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/f6/MD5E-s200453--abb73fe4e9dfcd39a1f0eb101919f63a.nii.gz/MD5E-s200453--abb73fe4e9dfcd39a1f0eb101919f63a.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/GG/MD5E-s270288--4527216abe3eeff8e3ad5844a07b6cf8.nii.gz/MD5E-s270288--4527216abe3eeff8e3ad5844a07b6cf8.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026046/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/WX/MD5E-s300875--4a62b87bcf320c5a5b58b961ea454393.nii.gz/MD5E-s300875--4a62b87bcf320c5a5b58b961ea454393.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_7/sub-0026046/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/zx/MD5E-s25644--885f5b0201677d2fc0e827915dfae019.nii.gz/MD5E-s25644--885f5b0201677d2fc0e827915dfae019.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/aal3_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026046/ses-1/mri/aal3_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qj/86/MD5E-s202485--5879b3d56c12a58aadf8a0d81f9930d8.nii.gz/MD5E-s202485--5879b3d56c12a58aadf8a0d81f9930d8.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/anatomy3_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_7/sub-0026046/ses-1/mri/anatomy3_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ww/zm/MD5E-s147773--8392a203387abcad61a6e0ca99464ba0.nii.gz/MD5E-s147773--8392a203387abcad61a6e0ca99464ba0.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/anon_misub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/V0/MD5E-s4862056--c8ddfe9dda0b37f4ee7cc68b33903cee.nii.gz/MD5E-s4862056--c8ddfe9dda0b37f4ee7cc68b33903cee.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/anon_msub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/zq/MD5E-s11759135--270ffe9ffdcbc44d51e7b996aac31e56.nii.gz/MD5E-s11759135--270ffe9ffdcbc44d51e7b996aac31e56.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/cat_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/0p/MD5E-s108393--ba633e64d075cbeee7670735723bd16c.nii.gz/MD5E-s108393--ba633e64d075cbeee7670735723bd16c.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/cobra_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026046/ses-1/mri/cobra_sub-0026046_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/86/gX/MD5E-s54092--a3d6291cc8e679216dbad78ee3c12c9a.nii.gz/MD5E-s54092--a3d6291cc8e679216dbad78ee3c12c9a.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/hammers_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026046/ses-1/mri/hammers_sub-0026046_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/gp/GK/MD5E-s158513--0873dd4c656ec57fbdba822f2532739e.nii.gz/MD5E-s158513--0873dd4c656ec57fbdba822f2532739e.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/ibsr_sub-0026046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026046/ses-1/mri/ibsr_sub-0026046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/40/MD5E-s166741--9557bda130085f8642df240bc7e486c5.nii.gz/MD5E-s166741--9557bda130085f8642df240bc7e486c5.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/it_sub-0026046_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/mK/MD5E-s284--09ed7f0a6dd9fd0f26a544a99295375c.mat/MD5E-s284--09ed7f0a6dd9fd0f26a544a99295375c.mat

IPCAS_7/sub-0026046/ses-1/mri/it_sub-0026046_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/2W/MD5E-s284--e5dd1ee672b636b8fc57739c3ab05af0.mat/MD5E-s284--e5dd1ee672b636b8fc57739c3ab05af0.mat

IPCAS_7/sub-0026046/ses-1/mri/iy_sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/julichbrain_sub-0026046_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026046/ses-1/mri/julichbrain_sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/lpba40_sub-0026046_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026046/ses-1/mri/lpba40_sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/m0wp1sub-0026046_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Vm/Qm/MD5E-s2604511--da6d00b02cc2ac7a395494a0a9674531.nii.gz/MD5E-s2604511--da6d00b02cc2ac7a395494a0a9674531.nii.gz

IPCAS_7/sub-0026046/ses-1/mri/m0wp2sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/m0wp3sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/mori_sub-0026046_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026046/ses-1/mri/mori_sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/mwp1sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/mwp2sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/mwp3sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/neuromorphometrics_sub-0026046_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026046/ses-1/mri/neuromorphometrics_sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/p0sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/p1sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/p2sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/p3sub-0026046_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/rp1sub-0026046_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/rp2sub-0026046_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/rp3sub-0026046_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026046/ses-1/mri/t_sub-0026046_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026046/ses-1/mri/t_sub-0026046_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026046/ses-1/mri/thalamus_sub-0026046_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026046/ses-1/mri/thalamus_sub-0026046_ses-1_run-1_T1w.nii.gz

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