[DATALAD RUNCMD] Compute SWU_4/sub-0025753/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025753/ses-1/anat/sub-0025753_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025753/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025753/ses-1/label/catROI_sub-0025753_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z8/XZ/MD5E-s61127--c0225071caf9233f8d8fbbd0b2449eca.mat/MD5E-s61127--c0225071caf9233f8d8fbbd0b2449eca.mat

SWU_4/sub-0025753/ses-1/label/catROI_sub-0025753_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/97/MD5E-s188506--b95dffeca98f2d126140027999a678b7.xml/MD5E-s188506--b95dffeca98f2d126140027999a678b7.xml

SWU_4/sub-0025753/ses-1/label/catROIs_sub-0025753_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/jm/MD5E-s120067--5d671a173d9f211163d71da56317f55f.mat/MD5E-s120067--5d671a173d9f211163d71da56317f55f.mat

SWU_4/sub-0025753/ses-1/label/catROIs_sub-0025753_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z5/2w/MD5E-s332120--f18bba980b1496be2ea35aba476aface.xml/MD5E-s332120--f18bba980b1496be2ea35aba476aface.xml

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/PM/MD5E-s168225--6e2e836cbd22537a06763beff0fdfc7b.nii.gz/MD5E-s168225--6e2e836cbd22537a06763beff0fdfc7b.nii.gz

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/qq/MD5E-s187310--7dfe1f5a5bf34da9c5cd8a0e04d4a8fe.nii.gz/MD5E-s187310--7dfe1f5a5bf34da9c5cd8a0e04d4a8fe.nii.gz

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/FW/MD5E-s252291--82479453a894c70034a3db9c066e256e.nii.gz/MD5E-s252291--82479453a894c70034a3db9c066e256e.nii.gz

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025753/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/QQ/MD5E-s279794--ed2127e9bddfa2d9602a619072646840.nii.gz/MD5E-s279794--ed2127e9bddfa2d9602a619072646840.nii.gz

SWU_4/sub-0025753/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025753/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/Zf/MD5E-s24924--8c89260056ec288f90362acba43f766e.nii.gz/MD5E-s24924--8c89260056ec288f90362acba43f766e.nii.gz

SWU_4/sub-0025753/ses-1/mri/aal3_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025753/ses-1/mri/aal3_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/Q5/MD5E-s188861--1e83373ba065d0393411a5a8bb261fa2.nii.gz/MD5E-s188861--1e83373ba065d0393411a5a8bb261fa2.nii.gz

SWU_4/sub-0025753/ses-1/mri/anatomy3_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025753/ses-1/mri/anatomy3_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/7w/MD5E-s137768--93f74e2d9e122e79b5cd68fa4ffcbbe5.nii.gz/MD5E-s137768--93f74e2d9e122e79b5cd68fa4ffcbbe5.nii.gz

SWU_4/sub-0025753/ses-1/mri/anon_misub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/GQ/MD5E-s9123375--b7709be2ccc7940d4ff25475cb352e28.nii.gz/MD5E-s9123375--b7709be2ccc7940d4ff25475cb352e28.nii.gz

SWU_4/sub-0025753/ses-1/mri/anon_msub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/k0/MD5E-s9144902--7d8a5bd6da0864ce3eb5694c7b6e61f0.nii.gz/MD5E-s9144902--7d8a5bd6da0864ce3eb5694c7b6e61f0.nii.gz

SWU_4/sub-0025753/ses-1/mri/cat_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/jJ/MD5E-s98891--df1ec83dd3d6952db3ca865af39f8f27.nii.gz/MD5E-s98891--df1ec83dd3d6952db3ca865af39f8f27.nii.gz

SWU_4/sub-0025753/ses-1/mri/cobra_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025753/ses-1/mri/cobra_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/Q4/MD5E-s49856--5ea778a9bf978f017ae0039a6a0cd798.nii.gz/MD5E-s49856--5ea778a9bf978f017ae0039a6a0cd798.nii.gz

SWU_4/sub-0025753/ses-1/mri/hammers_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025753/ses-1/mri/hammers_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/9F/MD5E-s149161--6a6cebdeb08fb82c4cd0778874128c25.nii.gz/MD5E-s149161--6a6cebdeb08fb82c4cd0778874128c25.nii.gz

SWU_4/sub-0025753/ses-1/mri/ibsr_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025753/ses-1/mri/ibsr_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VV/V3/MD5E-s158356--01873b6a635014b65ac1f607018892de.nii.gz/MD5E-s158356--01873b6a635014b65ac1f607018892de.nii.gz

SWU_4/sub-0025753/ses-1/mri/it_sub-0025753_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/gw/MD5E-s283--137f3d8b5cf5941e5bfa347214ba94e5.mat/MD5E-s283--137f3d8b5cf5941e5bfa347214ba94e5.mat

SWU_4/sub-0025753/ses-1/mri/it_sub-0025753_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/96/MD5E-s283--7d6986e2938e042689c0c031fc0c084e.mat/MD5E-s283--7d6986e2938e042689c0c031fc0c084e.mat

SWU_4/sub-0025753/ses-1/mri/iy_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/zV/MD5E-s46521450--f18e266b811280ee7a91d1d50b3afe3d.nii.gz/MD5E-s46521450--f18e266b811280ee7a91d1d50b3afe3d.nii.gz

SWU_4/sub-0025753/ses-1/mri/julichbrain_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025753/ses-1/mri/julichbrain_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/Vx/MD5E-s201803--b95a8b6fed4144b2e335c32226e4781b.nii.gz/MD5E-s201803--b95a8b6fed4144b2e335c32226e4781b.nii.gz

SWU_4/sub-0025753/ses-1/mri/lpba40_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025753/ses-1/mri/lpba40_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/mp/MD5E-s145556--b3f3b9fbe93b407d8f5c2c277eed5b2a.nii.gz/MD5E-s145556--b3f3b9fbe93b407d8f5c2c277eed5b2a.nii.gz

SWU_4/sub-0025753/ses-1/mri/m0wp1sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/J6/MD5E-s2567797--7644a645934d46094d1163a4f05137eb.nii.gz/MD5E-s2567797--7644a645934d46094d1163a4f05137eb.nii.gz

SWU_4/sub-0025753/ses-1/mri/m0wp2sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/zX/MD5E-s2309276--59d288683876369389aecbd9c7a996e3.nii.gz/MD5E-s2309276--59d288683876369389aecbd9c7a996e3.nii.gz

SWU_4/sub-0025753/ses-1/mri/m0wp3sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/W7/MD5E-s2485352--077006eb3005d02cc69cddee22571c46.nii.gz/MD5E-s2485352--077006eb3005d02cc69cddee22571c46.nii.gz

SWU_4/sub-0025753/ses-1/mri/mori_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025753/ses-1/mri/mori_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/17/MD5E-s175442--1d0c484d9189f8aa2ba8da5e49fc5c4e.nii.gz/MD5E-s175442--1d0c484d9189f8aa2ba8da5e49fc5c4e.nii.gz

SWU_4/sub-0025753/ses-1/mri/mwp1sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/GZ/MD5E-s2572210--42f5dc6bcb75b764d5c54118edfff236.nii.gz/MD5E-s2572210--42f5dc6bcb75b764d5c54118edfff236.nii.gz

SWU_4/sub-0025753/ses-1/mri/mwp2sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/xV/MD5E-s2304589--1f29b976135005a9a03b9ccbfff2820f.nii.gz/MD5E-s2304589--1f29b976135005a9a03b9ccbfff2820f.nii.gz

SWU_4/sub-0025753/ses-1/mri/mwp3sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/33/MD5E-s2483453--95cef8e60b4e13f47d7db5c06a152612.nii.gz/MD5E-s2483453--95cef8e60b4e13f47d7db5c06a152612.nii.gz

SWU_4/sub-0025753/ses-1/mri/neuromorphometrics_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025753/ses-1/mri/neuromorphometrics_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/3m/MD5E-s202599--450f0d72e9ea2758705093a7d309ec97.nii.gz/MD5E-s202599--450f0d72e9ea2758705093a7d309ec97.nii.gz

SWU_4/sub-0025753/ses-1/mri/p0sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/42/MD5E-s648721--56bda2a2915a1e8a0ae9aede800efbcc.nii.gz/MD5E-s648721--56bda2a2915a1e8a0ae9aede800efbcc.nii.gz

SWU_4/sub-0025753/ses-1/mri/p1sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/x2/MD5E-s693010--97d3315abb2e6e032805b9213df73d02.nii.gz/MD5E-s693010--97d3315abb2e6e032805b9213df73d02.nii.gz

SWU_4/sub-0025753/ses-1/mri/p2sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/w4/MD5E-s460417--7a62b12b2623478e6df4dacee3d2b512.nii.gz/MD5E-s460417--7a62b12b2623478e6df4dacee3d2b512.nii.gz

SWU_4/sub-0025753/ses-1/mri/p3sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/17/MD5E-s381426--797a4185ff472a7fac1b0efb28133462.nii.gz/MD5E-s381426--797a4185ff472a7fac1b0efb28133462.nii.gz

SWU_4/sub-0025753/ses-1/mri/rp1sub-0025753_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/fw/MD5E-s450003--3803161584f43787c6dcbed222f37d72.nii.gz/MD5E-s450003--3803161584f43787c6dcbed222f37d72.nii.gz

SWU_4/sub-0025753/ses-1/mri/rp2sub-0025753_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/j7/MD5E-s310865--612fab815fc7b0a3afca8907aa68ba4d.nii.gz/MD5E-s310865--612fab815fc7b0a3afca8907aa68ba4d.nii.gz

SWU_4/sub-0025753/ses-1/mri/rp3sub-0025753_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/gq/MD5E-s277180--70cd0f65c0c445aae310cc7dad441ea9.nii.gz/MD5E-s277180--70cd0f65c0c445aae310cc7dad441ea9.nii.gz

SWU_4/sub-0025753/ses-1/mri/t_sub-0025753_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/Km/MD5E-s285--f93ebccb15ea49efe4bafbc55a15f368.mat/MD5E-s285--f93ebccb15ea49efe4bafbc55a15f368.mat

SWU_4/sub-0025753/ses-1/mri/t_sub-0025753_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/jf/MD5E-s283--48b77bc7112b1a1d13517ce1ecd051be.mat/MD5E-s283--48b77bc7112b1a1d13517ce1ecd051be.mat

SWU_4/sub-0025753/ses-1/mri/thalamus_sub-0025753_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025753/ses-1/mri/thalamus_sub-0025753_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/VQ/MD5E-s16439--fc3b879e6bff4e557ae1075c99650e59.nii.gz/MD5E-s16439--fc3b879e6bff4e557ae1075c99650e59.nii.gz

SWU_4/sub-0025753/ses-1/mri/wj_sub-0025753_ses-1_run-1_T1w.nii.gz

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