[DATALAD RUNCMD] Compute SWU_4/sub-0025679/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025679/ses-2/anat/sub-0025679_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025679/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025679/ses-2/label/catROI_sub-0025679_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/3p/MD5E-s61246--3f52ce18cc7eaab9a4d2d4291b730659.mat/MD5E-s61246--3f52ce18cc7eaab9a4d2d4291b730659.mat

SWU_4/sub-0025679/ses-2/label/catROI_sub-0025679_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/40/MD5E-s188819--3793bf5fe08de9a20c64470a0b1c8bc3.xml/MD5E-s188819--3793bf5fe08de9a20c64470a0b1c8bc3.xml

SWU_4/sub-0025679/ses-2/label/catROIs_sub-0025679_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/FF/MD5E-s120027--407d043c4fd39487d79f47326994a82a.mat/MD5E-s120027--407d043c4fd39487d79f47326994a82a.mat

SWU_4/sub-0025679/ses-2/label/catROIs_sub-0025679_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XK/Vz/MD5E-s332144--f84369ff674c666b263dfddf305838c8.xml/MD5E-s332144--f84369ff674c666b263dfddf305838c8.xml

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/60/MD5E-s165117--196340f75330395ce03e66e366183d42.nii.gz/MD5E-s165117--196340f75330395ce03e66e366183d42.nii.gz

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/VK/MD5E-s184652--a8626990525d0c8e1530e0fea2722f46.nii.gz/MD5E-s184652--a8626990525d0c8e1530e0fea2722f46.nii.gz

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/kP/MD5E-s251099--6ff2d36c94e2ad9f9d7026844bb1f6e4.nii.gz/MD5E-s251099--6ff2d36c94e2ad9f9d7026844bb1f6e4.nii.gz

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025679/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/2M/MD5E-s278459--895fa17a23d0848452b3e95af6da147b.nii.gz/MD5E-s278459--895fa17a23d0848452b3e95af6da147b.nii.gz

SWU_4/sub-0025679/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025679/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/wz/MD5E-s24476--c95de72c3b5eaa32dead9a9cd2a6b838.nii.gz/MD5E-s24476--c95de72c3b5eaa32dead9a9cd2a6b838.nii.gz

SWU_4/sub-0025679/ses-2/mri/aal3_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025679/ses-2/mri/aal3_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/k0/MD5E-s184537--d4f989b1598fbe2ebfe8b7b6132ff7cd.nii.gz/MD5E-s184537--d4f989b1598fbe2ebfe8b7b6132ff7cd.nii.gz

SWU_4/sub-0025679/ses-2/mri/anatomy3_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025679/ses-2/mri/anatomy3_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/8J/MD5E-s136691--33158d9e427393e28594a79af07fe6ec.nii.gz/MD5E-s136691--33158d9e427393e28594a79af07fe6ec.nii.gz

SWU_4/sub-0025679/ses-2/mri/anon_misub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/K9/MD5E-s11565319--aa2d29854016c52df3a0f03597d6ba52.nii.gz/MD5E-s11565319--aa2d29854016c52df3a0f03597d6ba52.nii.gz

SWU_4/sub-0025679/ses-2/mri/anon_msub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/j3/MD5E-s12815836--b6bf43b47d1ceca9aacd8ad62de4860d.nii.gz/MD5E-s12815836--b6bf43b47d1ceca9aacd8ad62de4860d.nii.gz

SWU_4/sub-0025679/ses-2/mri/cat_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/12/MD5E-s99012--98ee87c669b26f740bd12645991ac8cd.nii.gz/MD5E-s99012--98ee87c669b26f740bd12645991ac8cd.nii.gz

SWU_4/sub-0025679/ses-2/mri/cobra_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025679/ses-2/mri/cobra_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/fz/MD5E-s48458--50e75944b562996f6fb00d12fc4ebe49.nii.gz/MD5E-s48458--50e75944b562996f6fb00d12fc4ebe49.nii.gz

SWU_4/sub-0025679/ses-2/mri/hammers_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025679/ses-2/mri/hammers_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/qX/MD5E-s146696--d93e9064338e13811c27046156a2f0b9.nii.gz/MD5E-s146696--d93e9064338e13811c27046156a2f0b9.nii.gz

SWU_4/sub-0025679/ses-2/mri/ibsr_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025679/ses-2/mri/ibsr_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PQ/g2/MD5E-s153139--0af886ad8ec252054f37a8bd3a565665.nii.gz/MD5E-s153139--0af886ad8ec252054f37a8bd3a565665.nii.gz

SWU_4/sub-0025679/ses-2/mri/it_sub-0025679_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/fp/MD5E-s284--f627118dc0dfc02848ad6dbbb514f04e.mat/MD5E-s284--f627118dc0dfc02848ad6dbbb514f04e.mat

SWU_4/sub-0025679/ses-2/mri/it_sub-0025679_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/44/MD5E-s284--98ce57d2358b2901a996bd9e2141072e.mat/MD5E-s284--98ce57d2358b2901a996bd9e2141072e.mat

SWU_4/sub-0025679/ses-2/mri/iy_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/P0/MD5E-s45152442--de263f740ae625db7d992c0057736a23.nii.gz/MD5E-s45152442--de263f740ae625db7d992c0057736a23.nii.gz

SWU_4/sub-0025679/ses-2/mri/julichbrain_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025679/ses-2/mri/julichbrain_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/7V/MD5E-s198692--3c0fa6b54653eee9274d29d5508d8a1c.nii.gz/MD5E-s198692--3c0fa6b54653eee9274d29d5508d8a1c.nii.gz

SWU_4/sub-0025679/ses-2/mri/lpba40_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025679/ses-2/mri/lpba40_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/mZ/MD5E-s143497--7d5cf9cbe114924e8d97e361960bbcc0.nii.gz/MD5E-s143497--7d5cf9cbe114924e8d97e361960bbcc0.nii.gz

SWU_4/sub-0025679/ses-2/mri/m0wp1sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/pg/MD5E-s2595973--05f142ea1ab83cb3f3234f6cb7697453.nii.gz/MD5E-s2595973--05f142ea1ab83cb3f3234f6cb7697453.nii.gz

SWU_4/sub-0025679/ses-2/mri/m0wp2sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JW/4K/MD5E-s2317563--c273f8e5e3814cc118d5d3a35e0f1103.nii.gz/MD5E-s2317563--c273f8e5e3814cc118d5d3a35e0f1103.nii.gz

SWU_4/sub-0025679/ses-2/mri/m0wp3sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/8W/MD5E-s2546214--29b7ada28fb716dffee10f19ed536bca.nii.gz/MD5E-s2546214--29b7ada28fb716dffee10f19ed536bca.nii.gz

SWU_4/sub-0025679/ses-2/mri/mori_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025679/ses-2/mri/mori_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/72/MD5E-s171181--056e74a4d10630f1fa3c4a57f74899ac.nii.gz/MD5E-s171181--056e74a4d10630f1fa3c4a57f74899ac.nii.gz

SWU_4/sub-0025679/ses-2/mri/mwp1sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/Fm/MD5E-s2599458--ecc4da01b337127cb4cce578d92df19d.nii.gz/MD5E-s2599458--ecc4da01b337127cb4cce578d92df19d.nii.gz

SWU_4/sub-0025679/ses-2/mri/mwp2sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/Fg/MD5E-s2317323--bba9dfaff022e3dd20063ad1a341ef5e.nii.gz/MD5E-s2317323--bba9dfaff022e3dd20063ad1a341ef5e.nii.gz

SWU_4/sub-0025679/ses-2/mri/mwp3sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/vF/MD5E-s2542517--2212dd95f4b713c83916afcfe1ea74b1.nii.gz/MD5E-s2542517--2212dd95f4b713c83916afcfe1ea74b1.nii.gz

SWU_4/sub-0025679/ses-2/mri/neuromorphometrics_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025679/ses-2/mri/neuromorphometrics_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/Vz/MD5E-s199781--062c2e03925ebaf5363e4efdd87917a2.nii.gz/MD5E-s199781--062c2e03925ebaf5363e4efdd87917a2.nii.gz

SWU_4/sub-0025679/ses-2/mri/p0sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/PJ/MD5E-s648762--3168a8233f363771f84562b8eaba0767.nii.gz/MD5E-s648762--3168a8233f363771f84562b8eaba0767.nii.gz

SWU_4/sub-0025679/ses-2/mri/p1sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/zm/MD5E-s690432--5b7fced550ff4043a1c3c47cfcb9530b.nii.gz/MD5E-s690432--5b7fced550ff4043a1c3c47cfcb9530b.nii.gz

SWU_4/sub-0025679/ses-2/mri/p2sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/gx/MD5E-s451142--b82948161b6c4ffe0d37048d0805877a.nii.gz/MD5E-s451142--b82948161b6c4ffe0d37048d0805877a.nii.gz

SWU_4/sub-0025679/ses-2/mri/p3sub-0025679_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025679/ses-2/mri/rp1sub-0025679_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025679/ses-2/mri/rp2sub-0025679_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025679/ses-2/mri/rp3sub-0025679_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025679/ses-2/mri/t_sub-0025679_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025679/ses-2/mri/t_sub-0025679_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VV/fV/MD5E-s284--e0a869f486ecfc2890dd79e2ea869a6c.mat/MD5E-s284--e0a869f486ecfc2890dd79e2ea869a6c.mat

SWU_4/sub-0025679/ses-2/mri/thalamus_sub-0025679_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025679/ses-2/mri/thalamus_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025679/ses-2/mri/wj_sub-0025679_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/Qm/MD5E-s5535593--27288c9568f41fb7a8a7778988714452.nii.gz/MD5E-s5535593--27288c9568f41fb7a8a7778988714452.nii.gz

SWU_4/sub-0025679/ses-2/mri/wmisub-0025679_ses-2_run-1_T1w.nii.gz

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