[DATALAD RUNCMD] Compute NYU_2/sub-0025075/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025075/ses-1/anat/sub-0025075_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025075/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025075/ses-1/label/catROI_sub-0025075_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/9f/MD5E-s57889--f59ed81365545b75a542e0f6bcc5b89d.mat/MD5E-s57889--f59ed81365545b75a542e0f6bcc5b89d.mat

NYU_2/sub-0025075/ses-1/label/catROI_sub-0025075_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/ZK/MD5E-s188831--762680de50bf32c7db9264d02af7976a.xml/MD5E-s188831--762680de50bf32c7db9264d02af7976a.xml

NYU_2/sub-0025075/ses-1/label/catROI_sub-0025075_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W4/fx/MD5E-s57866--cda86ac842d0642212651de1886b53d3.mat/MD5E-s57866--cda86ac842d0642212651de1886b53d3.mat

NYU_2/sub-0025075/ses-1/label/catROI_sub-0025075_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/87/7P/MD5E-s188705--5babf1e93676b990204eb1c791c81da7.xml/MD5E-s188705--5babf1e93676b990204eb1c791c81da7.xml

NYU_2/sub-0025075/ses-1/label/catROIs_sub-0025075_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/pm/MD5E-s120260--8ddea0980e0ddf0f13738126e3bd0eb2.mat/MD5E-s120260--8ddea0980e0ddf0f13738126e3bd0eb2.mat

NYU_2/sub-0025075/ses-1/label/catROIs_sub-0025075_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/pX/MD5E-s332171--931f36503a368b9b62e0abd851a2e510.xml/MD5E-s332171--931f36503a368b9b62e0abd851a2e510.xml

NYU_2/sub-0025075/ses-1/label/catROIs_sub-0025075_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/12/90/MD5E-s120344--95cf9ab38669de25c98e33a75c00c0a6.mat/MD5E-s120344--95cf9ab38669de25c98e33a75c00c0a6.mat

NYU_2/sub-0025075/ses-1/label/catROIs_sub-0025075_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P3/ZW/MD5E-s332143--923114d02424434fc169292a02dd8531.xml/MD5E-s332143--923114d02424434fc169292a02dd8531.xml

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/K8/MD5E-s145111--a31352e8cb25000c4d3643518b57e764.nii.gz/MD5E-s145111--a31352e8cb25000c4d3643518b57e764.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3G/2m/MD5E-s145882--c0ef5d4a8cb6e1530af0ac3cc587b918.nii.gz/MD5E-s145882--c0ef5d4a8cb6e1530af0ac3cc587b918.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/Z0/MD5E-s161806--bfe6c889284a25ee31cb1989857e6c9e.nii.gz/MD5E-s161806--bfe6c889284a25ee31cb1989857e6c9e.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/15/Ww/MD5E-s163495--9df543a51bee38c073f6a3e953f0d672.nii.gz/MD5E-s163495--9df543a51bee38c073f6a3e953f0d672.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/JW/MD5E-s218239--bb96fd77bfb25ab466a55b308356c2c7.nii.gz/MD5E-s218239--bb96fd77bfb25ab466a55b308356c2c7.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MV/Vx/MD5E-s220212--eccd42c3b4f31112019623b5d2fe012f.nii.gz/MD5E-s220212--eccd42c3b4f31112019623b5d2fe012f.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m8/1z/MD5E-s242167--0ef2635a1c16aea5b89b4c19c58e99d6.nii.gz/MD5E-s242167--0ef2635a1c16aea5b89b4c19c58e99d6.nii.gz

NYU_2/sub-0025075/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pp/Mj/MD5E-s244026--f75470f32cfdf1d57222cbc3d46307a5.nii.gz/MD5E-s244026--f75470f32cfdf1d57222cbc3d46307a5.nii.gz

NYU_2/sub-0025075/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/7Z/MD5E-s19592--8a3392d77fb113e6d5807347a584ca5b.nii.gz/MD5E-s19592--8a3392d77fb113e6d5807347a584ca5b.nii.gz

NYU_2/sub-0025075/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qW/4W/MD5E-s19538--b652387d134f671d084cba3f07aa3f01.nii.gz/MD5E-s19538--b652387d134f671d084cba3f07aa3f01.nii.gz

NYU_2/sub-0025075/ses-1/mri/aal3_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/jG/MD5E-s164966--02baa9951498a57f5985d923c8965b6c.nii.gz/MD5E-s164966--02baa9951498a57f5985d923c8965b6c.nii.gz

NYU_2/sub-0025075/ses-1/mri/aal3_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m3/kz/MD5E-s166385--baae5945c4cacc397e4359b48ae0686c.nii.gz/MD5E-s166385--baae5945c4cacc397e4359b48ae0686c.nii.gz

NYU_2/sub-0025075/ses-1/mri/anatomy3_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/Q4/MD5E-s115771--d3a57ae5fd63dc2b28add3c842c4e5b5.nii.gz/MD5E-s115771--d3a57ae5fd63dc2b28add3c842c4e5b5.nii.gz

NYU_2/sub-0025075/ses-1/mri/anatomy3_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JG/KP/MD5E-s116808--c981ec955d0d59a608bd7bb29dcfacb1.nii.gz/MD5E-s116808--c981ec955d0d59a608bd7bb29dcfacb1.nii.gz

NYU_2/sub-0025075/ses-1/mri/anon_misub-0025075_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/WZ/pK/MD5E-s3635847--f844ccb1be8c3130cf6116f84219bacb.nii.gz/MD5E-s3635847--f844ccb1be8c3130cf6116f84219bacb.nii.gz

NYU_2/sub-0025075/ses-1/mri/anon_misub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/anon_msub-0025075_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/V2/7g/MD5E-s9403401--bc884f309e3756b2d7285132e82542c3.nii.gz/MD5E-s9403401--bc884f309e3756b2d7285132e82542c3.nii.gz

NYU_2/sub-0025075/ses-1/mri/anon_msub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/cat_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Qk/MD5E-s84317--f636e4574a92459e1e7c55f1f1704342.nii.gz/MD5E-s84317--f636e4574a92459e1e7c55f1f1704342.nii.gz

NYU_2/sub-0025075/ses-1/mri/cat_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/cobra_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/z7/MD5E-s40428--46bae9fd04f540f848ae11d80a23e6d9.nii.gz/MD5E-s40428--46bae9fd04f540f848ae11d80a23e6d9.nii.gz

NYU_2/sub-0025075/ses-1/mri/cobra_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/hammers_sub-0025075_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/Vw/MD5E-s126953--a457845d59f4c9e171d36245123752b2.nii.gz/MD5E-s126953--a457845d59f4c9e171d36245123752b2.nii.gz

NYU_2/sub-0025075/ses-1/mri/hammers_sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/ibsr_sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/ibsr_sub-0025075_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/it_sub-0025075_ses-1_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/fx/mM/MD5E-s283--a07376865ffa33f8c9e982813257a14c.mat/MD5E-s283--a07376865ffa33f8c9e982813257a14c.mat

NYU_2/sub-0025075/ses-1/mri/it_sub-0025075_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025075/ses-1/mri/it_sub-0025075_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/it_sub-0025075_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025075/ses-1/mri/iy_sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/iy_sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/julichbrain_sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/julichbrain_sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/lpba40_sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/lpba40_sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/m0wp1sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/m0wp1sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/m0wp2sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/m0wp2sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/m0wp3sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/m0wp3sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/mori_sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/mori_sub-0025075_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/mwp1sub-0025075_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025075/ses-1/mri/mwp1sub-0025075_ses-1_run-2_T1w.nii.gz

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