[DATALAD RUNCMD] Compute SWU_4/sub-0025659/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025659/ses-2/anat/sub-0025659_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025659/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025659/ses-2/label/catROI_sub-0025659_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/Fm/MD5E-s57673--4f5ea160b6483e1ef1765c80455772d7.mat/MD5E-s57673--4f5ea160b6483e1ef1765c80455772d7.mat

SWU_4/sub-0025659/ses-2/label/catROI_sub-0025659_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/j3/MD5E-s188909--1a0202fdef8d169749d23dc261b14280.xml/MD5E-s188909--1a0202fdef8d169749d23dc261b14280.xml

SWU_4/sub-0025659/ses-2/label/catROIs_sub-0025659_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/6m/MD5E-s120117--712207cd71ae92ef8a11897a0c1095f4.mat/MD5E-s120117--712207cd71ae92ef8a11897a0c1095f4.mat

SWU_4/sub-0025659/ses-2/label/catROIs_sub-0025659_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/5x/MD5E-s332123--254cea1924aeead5b0908bc0c9d68e15.xml/MD5E-s332123--254cea1924aeead5b0908bc0c9d68e15.xml

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/WV/MD5E-s165141--003e3051d41c5bcf00c553b3e6c6df9d.nii.gz/MD5E-s165141--003e3051d41c5bcf00c553b3e6c6df9d.nii.gz

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/5P/MD5E-s183491--3b10dbe6b291c0bcf9ba2efcc48edd7e.nii.gz/MD5E-s183491--3b10dbe6b291c0bcf9ba2efcc48edd7e.nii.gz

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/Qz/MD5E-s248881--dd4ef88e75e73bc5255542d06bb06be5.nii.gz/MD5E-s248881--dd4ef88e75e73bc5255542d06bb06be5.nii.gz

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025659/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/xv/MD5E-s275763--2c7e9d090b070e3e0bf5ce1f56e90c55.nii.gz/MD5E-s275763--2c7e9d090b070e3e0bf5ce1f56e90c55.nii.gz

SWU_4/sub-0025659/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025659/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/5J/MD5E-s23632--351a61dac4e7621fa59a32df8fe7cecb.nii.gz/MD5E-s23632--351a61dac4e7621fa59a32df8fe7cecb.nii.gz

SWU_4/sub-0025659/ses-2/mri/aal3_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025659/ses-2/mri/aal3_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xg/jK/MD5E-s183361--fa7e1346f75d66ee13a6eb6dcb958e67.nii.gz/MD5E-s183361--fa7e1346f75d66ee13a6eb6dcb958e67.nii.gz

SWU_4/sub-0025659/ses-2/mri/anatomy3_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025659/ses-2/mri/anatomy3_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/w8/MD5E-s135067--d0c8a97584f32bf365e0b37fe5b60292.nii.gz/MD5E-s135067--d0c8a97584f32bf365e0b37fe5b60292.nii.gz

SWU_4/sub-0025659/ses-2/mri/anon_misub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Q/P6/MD5E-s9682664--02c41301b327ab962fe71e6321a31cf2.nii.gz/MD5E-s9682664--02c41301b327ab962fe71e6321a31cf2.nii.gz

SWU_4/sub-0025659/ses-2/mri/anon_msub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/23/MD5E-s11067497--ca66096e54bc2562ed1880d89231c03d.nii.gz/MD5E-s11067497--ca66096e54bc2562ed1880d89231c03d.nii.gz

SWU_4/sub-0025659/ses-2/mri/cat_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/7J/MD5E-s100065--b222e2c559a820117689464b0d773d3d.nii.gz/MD5E-s100065--b222e2c559a820117689464b0d773d3d.nii.gz

SWU_4/sub-0025659/ses-2/mri/cobra_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025659/ses-2/mri/cobra_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wz/vM/MD5E-s46609--0099678850fa964bf057b13e8d99b68c.nii.gz/MD5E-s46609--0099678850fa964bf057b13e8d99b68c.nii.gz

SWU_4/sub-0025659/ses-2/mri/hammers_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025659/ses-2/mri/hammers_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/66/MD5E-s146336--dc18393069f19d2a7ac98ccd8b09f611.nii.gz/MD5E-s146336--dc18393069f19d2a7ac98ccd8b09f611.nii.gz

SWU_4/sub-0025659/ses-2/mri/ibsr_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025659/ses-2/mri/ibsr_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/jQ/MD5E-s154157--2363291c401fb2ff4dd107476dc928b9.nii.gz/MD5E-s154157--2363291c401fb2ff4dd107476dc928b9.nii.gz

SWU_4/sub-0025659/ses-2/mri/it_sub-0025659_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/w8/MD5E-s283--12e6043b9160d015feac062d58d6e9cf.mat/MD5E-s283--12e6043b9160d015feac062d58d6e9cf.mat

SWU_4/sub-0025659/ses-2/mri/it_sub-0025659_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/Qz/MD5E-s283--b7b4763bfb2655721cb267def6bc2091.mat/MD5E-s283--b7b4763bfb2655721cb267def6bc2091.mat

SWU_4/sub-0025659/ses-2/mri/iy_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/mf/MD5E-s44574641--6649ee9da4d0bf963b5496d70b73e0ee.nii.gz/MD5E-s44574641--6649ee9da4d0bf963b5496d70b73e0ee.nii.gz

SWU_4/sub-0025659/ses-2/mri/julichbrain_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025659/ses-2/mri/julichbrain_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/xG/MD5E-s197282--638f76fe1343e83ff441e67e788f0381.nii.gz/MD5E-s197282--638f76fe1343e83ff441e67e788f0381.nii.gz

SWU_4/sub-0025659/ses-2/mri/lpba40_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025659/ses-2/mri/lpba40_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/fj/MD5E-s143154--ca590473e952fafc4ac8d57ae7f9e2ec.nii.gz/MD5E-s143154--ca590473e952fafc4ac8d57ae7f9e2ec.nii.gz

SWU_4/sub-0025659/ses-2/mri/m0wp1sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/xw/MD5E-s2581590--626d4767ce85a456c7867b9d49d0bef9.nii.gz/MD5E-s2581590--626d4767ce85a456c7867b9d49d0bef9.nii.gz

SWU_4/sub-0025659/ses-2/mri/m0wp2sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/k2/MD5E-s2310822--a37ef6ebdf477b24190ede47414cc899.nii.gz/MD5E-s2310822--a37ef6ebdf477b24190ede47414cc899.nii.gz

SWU_4/sub-0025659/ses-2/mri/m0wp3sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/4x/MD5E-s2622353--b08ae1013245d4249b975a95a6183258.nii.gz/MD5E-s2622353--b08ae1013245d4249b975a95a6183258.nii.gz

SWU_4/sub-0025659/ses-2/mri/mori_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025659/ses-2/mri/mori_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/VM/MD5E-s172455--cc17377beeb41495d94b7140395b7a0a.nii.gz/MD5E-s172455--cc17377beeb41495d94b7140395b7a0a.nii.gz

SWU_4/sub-0025659/ses-2/mri/mwp1sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/5w/MD5E-s2586225--a8ef37c91b5d7c368429f6a2687ddb2a.nii.gz/MD5E-s2586225--a8ef37c91b5d7c368429f6a2687ddb2a.nii.gz

SWU_4/sub-0025659/ses-2/mri/mwp2sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/w6/MD5E-s2310478--0683f288689d87e49637c5cd6044fa9e.nii.gz/MD5E-s2310478--0683f288689d87e49637c5cd6044fa9e.nii.gz

SWU_4/sub-0025659/ses-2/mri/mwp3sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/fX/MD5E-s2618855--64cddde545d3b45160b9005e62b4798b.nii.gz/MD5E-s2618855--64cddde545d3b45160b9005e62b4798b.nii.gz

SWU_4/sub-0025659/ses-2/mri/neuromorphometrics_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025659/ses-2/mri/neuromorphometrics_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/mK/MD5E-s197944--b0ecfc141c8c45d1f0497f4865522b99.nii.gz/MD5E-s197944--b0ecfc141c8c45d1f0497f4865522b99.nii.gz

SWU_4/sub-0025659/ses-2/mri/p0sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/Z9/MD5E-s644117--ad6964e37a1bcc5bf09b014ced42df1c.nii.gz/MD5E-s644117--ad6964e37a1bcc5bf09b014ced42df1c.nii.gz

SWU_4/sub-0025659/ses-2/mri/p1sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pg/wF/MD5E-s679648--a990e90ffe1d37f84b453a6b2665056e.nii.gz/MD5E-s679648--a990e90ffe1d37f84b453a6b2665056e.nii.gz

SWU_4/sub-0025659/ses-2/mri/p2sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/J4/MD5E-s437293--1318db0b2b826d39be3f8dbd6f1c0db8.nii.gz/MD5E-s437293--1318db0b2b826d39be3f8dbd6f1c0db8.nii.gz

SWU_4/sub-0025659/ses-2/mri/p3sub-0025659_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025659/ses-2/mri/rp1sub-0025659_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/M1/MD5E-s456110--01984977f28cfea59f166f2af312c339.nii.gz/MD5E-s456110--01984977f28cfea59f166f2af312c339.nii.gz

SWU_4/sub-0025659/ses-2/mri/rp2sub-0025659_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025659/ses-2/mri/rp3sub-0025659_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025659/ses-2/mri/t_sub-0025659_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/9G/MD5E-s284--da22152734b87f70c9a0d7077659b353.mat/MD5E-s284--da22152734b87f70c9a0d7077659b353.mat

SWU_4/sub-0025659/ses-2/mri/t_sub-0025659_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/v6/MD5E-s282--a047c0f27f13d6ae7c895ebd755e0319.mat/MD5E-s282--a047c0f27f13d6ae7c895ebd755e0319.mat

SWU_4/sub-0025659/ses-2/mri/thalamus_sub-0025659_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025659/ses-2/mri/thalamus_sub-0025659_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025659/ses-2/mri/wj_sub-0025659_ses-2_run-1_T1w.nii.gz

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