[DATALAD RUNCMD] Compute BNU_2/sub-0025961/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025961/ses-1/anat/sub-0025961_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025961/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025961/ses-1/label/catROI_sub-0025961_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/2Q/MD5E-s57925--20d797dd87ce74a78210f12214ed60c1.mat/MD5E-s57925--20d797dd87ce74a78210f12214ed60c1.mat

BNU_2/sub-0025961/ses-1/label/catROI_sub-0025961_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/5f/MD5E-s188827--fadbaa04988d5db4f640f607d543e921.xml/MD5E-s188827--fadbaa04988d5db4f640f607d543e921.xml

BNU_2/sub-0025961/ses-1/label/catROIs_sub-0025961_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/wv/MD5E-s120028--553ced3d93bc5f622a978e27112e4c18.mat/MD5E-s120028--553ced3d93bc5f622a978e27112e4c18.mat

BNU_2/sub-0025961/ses-1/label/catROIs_sub-0025961_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/qM/MD5E-s332098--954e489db0fb9e1fa8c25db954424e9c.xml/MD5E-s332098--954e489db0fb9e1fa8c25db954424e9c.xml

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/z3/MD5E-s150420--d33483b9af99d937e9d9e6c0391cad92.nii.gz/MD5E-s150420--d33483b9af99d937e9d9e6c0391cad92.nii.gz

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/qX/MD5E-s168565--0eb4a9c63ab12490990cbbe8e20e577c.nii.gz/MD5E-s168565--0eb4a9c63ab12490990cbbe8e20e577c.nii.gz

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/pV/MD5E-s224247--9dfcf4230ad4695677a2f62064d84687.nii.gz/MD5E-s224247--9dfcf4230ad4695677a2f62064d84687.nii.gz

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025961/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/0Z/MD5E-s250128--f01cff9c98234bae4569b6b16ac340b7.nii.gz/MD5E-s250128--f01cff9c98234bae4569b6b16ac340b7.nii.gz

BNU_2/sub-0025961/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025961/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/gq/MD5E-s21070--e0e563b2816b3f9127674dd77bf5a212.nii.gz/MD5E-s21070--e0e563b2816b3f9127674dd77bf5a212.nii.gz

BNU_2/sub-0025961/ses-1/mri/aal3_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025961/ses-1/mri/aal3_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/fQ/MD5E-s169182--89036089f6e8bf512747c1975ab1af35.nii.gz/MD5E-s169182--89036089f6e8bf512747c1975ab1af35.nii.gz

BNU_2/sub-0025961/ses-1/mri/anatomy3_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025961/ses-1/mri/anatomy3_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/7V/MD5E-s120463--12d153f509184da548acf0f2e8c4efa3.nii.gz/MD5E-s120463--12d153f509184da548acf0f2e8c4efa3.nii.gz

BNU_2/sub-0025961/ses-1/mri/anon_misub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/q1/MD5E-s3782106--1b9c975f47ed4c1ebddb8b783077daa4.nii.gz/MD5E-s3782106--1b9c975f47ed4c1ebddb8b783077daa4.nii.gz

BNU_2/sub-0025961/ses-1/mri/anon_msub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/fg/MD5E-s8971376--18d208575168067dfcc005029f278c3a.nii.gz/MD5E-s8971376--18d208575168067dfcc005029f278c3a.nii.gz

BNU_2/sub-0025961/ses-1/mri/cat_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/Jx/MD5E-s89769--111ca653136d3855c2cad52b32bc7b6f.nii.gz/MD5E-s89769--111ca653136d3855c2cad52b32bc7b6f.nii.gz

BNU_2/sub-0025961/ses-1/mri/cobra_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025961/ses-1/mri/cobra_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/9Z/MD5E-s42408--dd317c9b303a3da10d5da220013f1ecc.nii.gz/MD5E-s42408--dd317c9b303a3da10d5da220013f1ecc.nii.gz

BNU_2/sub-0025961/ses-1/mri/hammers_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025961/ses-1/mri/hammers_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X4/p1/MD5E-s137622--4b3659ca2c077efabe42389a3d47eda5.nii.gz/MD5E-s137622--4b3659ca2c077efabe42389a3d47eda5.nii.gz

BNU_2/sub-0025961/ses-1/mri/ibsr_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025961/ses-1/mri/ibsr_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/30/MD5E-s140959--f90c42ddd32be2db956c0677d76b34ec.nii.gz/MD5E-s140959--f90c42ddd32be2db956c0677d76b34ec.nii.gz

BNU_2/sub-0025961/ses-1/mri/it_sub-0025961_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/fz/MD5E-s283--6feb6b33e50193dc70ab7ad5abf46557.mat/MD5E-s283--6feb6b33e50193dc70ab7ad5abf46557.mat

BNU_2/sub-0025961/ses-1/mri/it_sub-0025961_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/f9/MD5E-s282--771e114c9059ccdd47bd9a0e2238c1bf.mat/MD5E-s282--771e114c9059ccdd47bd9a0e2238c1bf.mat

BNU_2/sub-0025961/ses-1/mri/iy_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/pj/MD5E-s34582546--e7e847d36c4c3c280eb3fa345c6ea92e.nii.gz/MD5E-s34582546--e7e847d36c4c3c280eb3fa345c6ea92e.nii.gz

BNU_2/sub-0025961/ses-1/mri/julichbrain_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025961/ses-1/mri/julichbrain_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/pW/MD5E-s180968--17ec7e472960811edc953e8cf22ffa0a.nii.gz/MD5E-s180968--17ec7e472960811edc953e8cf22ffa0a.nii.gz

BNU_2/sub-0025961/ses-1/mri/lpba40_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025961/ses-1/mri/lpba40_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/z8/MD5E-s132649--71032a0d9f000604b4fe17253fae7efd.nii.gz/MD5E-s132649--71032a0d9f000604b4fe17253fae7efd.nii.gz

BNU_2/sub-0025961/ses-1/mri/m0wp1sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/7m/MD5E-s2589335--ec6cc4f3b603f4c20162afdd7cfb97e8.nii.gz/MD5E-s2589335--ec6cc4f3b603f4c20162afdd7cfb97e8.nii.gz

BNU_2/sub-0025961/ses-1/mri/m0wp2sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/J7/MD5E-s2256796--46073a2d483e782437d4e9d5adcafc49.nii.gz/MD5E-s2256796--46073a2d483e782437d4e9d5adcafc49.nii.gz

BNU_2/sub-0025961/ses-1/mri/m0wp3sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/XZ/MD5E-s2473091--a7e0bd63c6c4733d04824a3825ad4520.nii.gz/MD5E-s2473091--a7e0bd63c6c4733d04824a3825ad4520.nii.gz

BNU_2/sub-0025961/ses-1/mri/mori_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025961/ses-1/mri/mori_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/7p/MD5E-s156932--fb7f3eccda2ce76c41fdee8fc538e3cb.nii.gz/MD5E-s156932--fb7f3eccda2ce76c41fdee8fc538e3cb.nii.gz

BNU_2/sub-0025961/ses-1/mri/mwp1sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9F/XQ/MD5E-s2589814--aae6e7448e18ddbf48a9d012bcd491b3.nii.gz/MD5E-s2589814--aae6e7448e18ddbf48a9d012bcd491b3.nii.gz

BNU_2/sub-0025961/ses-1/mri/mwp2sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/wP/MD5E-s2251176--6fe861920178074baf4907050470add7.nii.gz/MD5E-s2251176--6fe861920178074baf4907050470add7.nii.gz

BNU_2/sub-0025961/ses-1/mri/mwp3sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025961/ses-1/mri/neuromorphometrics_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025961/ses-1/mri/neuromorphometrics_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/xm/MD5E-s184967--ef993543d458a3d75bd76ee5b0fc9de4.nii.gz/MD5E-s184967--ef993543d458a3d75bd76ee5b0fc9de4.nii.gz

BNU_2/sub-0025961/ses-1/mri/p0sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/Vm/MD5E-s763539--c97abc3c3db5a75b4c96173df30d8d3a.nii.gz/MD5E-s763539--c97abc3c3db5a75b4c96173df30d8d3a.nii.gz

BNU_2/sub-0025961/ses-1/mri/p1sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/xf/MD5E-s782357--936b998d5500504851407625dd702031.nii.gz/MD5E-s782357--936b998d5500504851407625dd702031.nii.gz

BNU_2/sub-0025961/ses-1/mri/p2sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/jX/MD5E-s519215--5ea706a2dc34c089ba442f7db8cfd2dd.nii.gz/MD5E-s519215--5ea706a2dc34c089ba442f7db8cfd2dd.nii.gz

BNU_2/sub-0025961/ses-1/mri/p3sub-0025961_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025961/ses-1/mri/rp1sub-0025961_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025961/ses-1/mri/rp2sub-0025961_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025961/ses-1/mri/rp3sub-0025961_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025961/ses-1/mri/t_sub-0025961_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025961/ses-1/mri/t_sub-0025961_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/Fm/MD5E-s283--cc3d07c57f95e702669bd2818f829181.mat/MD5E-s283--cc3d07c57f95e702669bd2818f829181.mat

BNU_2/sub-0025961/ses-1/mri/thalamus_sub-0025961_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025961/ses-1/mri/thalamus_sub-0025961_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025961/ses-1/mri/wj_sub-0025961_ses-1_run-1_T1w.nii.gz

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