[DATALAD RUNCMD] Compute BNU_2/sub-0025971/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025971/ses-2/anat/sub-0025971_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025971/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025971/ses-2/label/catROI_sub-0025971_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/MJ/MD5E-s57896--2789a695441021f5b7a417d51e6fe4bb.mat/MD5E-s57896--2789a695441021f5b7a417d51e6fe4bb.mat

BNU_2/sub-0025971/ses-2/label/catROI_sub-0025971_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/mG/MD5E-s188545--b5bdcd442cf1e23bb5979ee02d7ffd90.xml/MD5E-s188545--b5bdcd442cf1e23bb5979ee02d7ffd90.xml

BNU_2/sub-0025971/ses-2/label/catROIs_sub-0025971_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/kP/MD5E-s120017--6a64d075f2c650dfce3b624e9d4d33c7.mat/MD5E-s120017--6a64d075f2c650dfce3b624e9d4d33c7.mat

BNU_2/sub-0025971/ses-2/label/catROIs_sub-0025971_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/9g/MD5E-s332185--cc9c3c2503a8d3998ff8f0ec45103b4c.xml/MD5E-s332185--cc9c3c2503a8d3998ff8f0ec45103b4c.xml

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/07/MD5E-s172408--88d58c390336db51fba56ae3c5f77ea3.nii.gz/MD5E-s172408--88d58c390336db51fba56ae3c5f77ea3.nii.gz

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/Xx/MD5E-s192068--ad947170548e42497e76087437de0d93.nii.gz/MD5E-s192068--ad947170548e42497e76087437de0d93.nii.gz

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/M0/MD5E-s259603--cc51aec51af6b1ae8548b513fbf4bffe.nii.gz/MD5E-s259603--cc51aec51af6b1ae8548b513fbf4bffe.nii.gz

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025971/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/vq/MD5E-s287661--32ed6b08633201839c80d7c25023fbf1.nii.gz/MD5E-s287661--32ed6b08633201839c80d7c25023fbf1.nii.gz

BNU_2/sub-0025971/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025971/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mz/P9/MD5E-s24685--a69c463fcfd046898f9b6e99ad585a25.nii.gz/MD5E-s24685--a69c463fcfd046898f9b6e99ad585a25.nii.gz

BNU_2/sub-0025971/ses-2/mri/aal3_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025971/ses-2/mri/aal3_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/XG/MD5E-s192320--60ab2f6acf7d789baa41b77b34ee260d.nii.gz/MD5E-s192320--60ab2f6acf7d789baa41b77b34ee260d.nii.gz

BNU_2/sub-0025971/ses-2/mri/anatomy3_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025971/ses-2/mri/anatomy3_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/vX/MD5E-s141522--afa12ab39d00904a21a50360f4a34822.nii.gz/MD5E-s141522--afa12ab39d00904a21a50360f4a34822.nii.gz

BNU_2/sub-0025971/ses-2/mri/anon_misub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/vK/MD5E-s4796352--9d2fe92e3c70bf3a1dc52a7ddd812a1b.nii.gz/MD5E-s4796352--9d2fe92e3c70bf3a1dc52a7ddd812a1b.nii.gz

BNU_2/sub-0025971/ses-2/mri/anon_msub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/74/MD5E-s11114430--b7bdaaec6445b6482e4983be0a859056.nii.gz/MD5E-s11114430--b7bdaaec6445b6482e4983be0a859056.nii.gz

BNU_2/sub-0025971/ses-2/mri/cat_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/86/MD5E-s103087--057ea0e113899f3b6b318a4a2f5e0fba.nii.gz/MD5E-s103087--057ea0e113899f3b6b318a4a2f5e0fba.nii.gz

BNU_2/sub-0025971/ses-2/mri/cobra_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025971/ses-2/mri/cobra_sub-0025971_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/xx/JM/MD5E-s48440--2ffc8c005aa6a8e3f00993a4a444962f.nii.gz/MD5E-s48440--2ffc8c005aa6a8e3f00993a4a444962f.nii.gz

BNU_2/sub-0025971/ses-2/mri/hammers_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025971/ses-2/mri/hammers_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/mK/MD5E-s152422--918c3ada67a6c5ffd162d414c959b2f1.nii.gz/MD5E-s152422--918c3ada67a6c5ffd162d414c959b2f1.nii.gz

BNU_2/sub-0025971/ses-2/mri/ibsr_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025971/ses-2/mri/ibsr_sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/Wm/MD5E-s161285--fc73820685c194b69035828572b9e18a.nii.gz/MD5E-s161285--fc73820685c194b69035828572b9e18a.nii.gz

BNU_2/sub-0025971/ses-2/mri/it_sub-0025971_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/5Q/MD5E-s283--46f62934d91e6173741f9d3acbfa1cce.mat/MD5E-s283--46f62934d91e6173741f9d3acbfa1cce.mat

BNU_2/sub-0025971/ses-2/mri/it_sub-0025971_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/Q0/MD5E-s284--521f15fb32397523d3d8f54364725433.mat/MD5E-s284--521f15fb32397523d3d8f54364725433.mat

BNU_2/sub-0025971/ses-2/mri/iy_sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/julichbrain_sub-0025971_ses-2_run-1_T1w.csv

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BNU_2/sub-0025971/ses-2/mri/julichbrain_sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/lpba40_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025971/ses-2/mri/lpba40_sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/m0wp1sub-0025971_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/x4/MD5E-s2557665--a3179fc54578bb156e2def8bac33aa8b.nii.gz/MD5E-s2557665--a3179fc54578bb156e2def8bac33aa8b.nii.gz

BNU_2/sub-0025971/ses-2/mri/m0wp2sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/m0wp3sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/mori_sub-0025971_ses-2_run-1_T1w.csv

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BNU_2/sub-0025971/ses-2/mri/mori_sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/mwp1sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/mwp2sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/mwp3sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/neuromorphometrics_sub-0025971_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025971/ses-2/mri/neuromorphometrics_sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/p0sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/p1sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/p2sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/p3sub-0025971_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025971/ses-2/mri/rp1sub-0025971_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025971/ses-2/mri/rp2sub-0025971_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025971/ses-2/mri/rp3sub-0025971_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025971/ses-2/mri/t_sub-0025971_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025971/ses-2/mri/t_sub-0025971_ses-2_run-1_T1w_rigid_reorient.mat

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BNU_2/sub-0025971/ses-2/mri/thalamus_sub-0025971_ses-2_run-1_T1w.csv

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BNU_2/sub-0025971/ses-2/mri/thalamus_sub-0025971_ses-2_run-1_T1w.nii.gz

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