[DATALAD RUNCMD] Compute SWU_4/sub-0025840/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025840/ses-1/anat/sub-0025840_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025840/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025840/ses-1/label/catROI_sub-0025840_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/k7/MD5E-s57618--ddd5fd9c85b32be58a96fce5889f88aa.mat/MD5E-s57618--ddd5fd9c85b32be58a96fce5889f88aa.mat

SWU_4/sub-0025840/ses-1/label/catROI_sub-0025840_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/X7/MD5E-s188842--5c7547c471fbeecc45100c4a5e284b35.xml/MD5E-s188842--5c7547c471fbeecc45100c4a5e284b35.xml

SWU_4/sub-0025840/ses-1/label/catROIs_sub-0025840_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/jj/MD5E-s120075--1055da05f9033fb312d0a713a713d8c1.mat/MD5E-s120075--1055da05f9033fb312d0a713a713d8c1.mat

SWU_4/sub-0025840/ses-1/label/catROIs_sub-0025840_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/jz/MD5E-s332045--8f4a55d8b23159cc07908260c5932407.xml/MD5E-s332045--8f4a55d8b23159cc07908260c5932407.xml

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/F2/MD5E-s158353--d2d7d442da981a8d95ecd7f55410df19.nii.gz/MD5E-s158353--d2d7d442da981a8d95ecd7f55410df19.nii.gz

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/f5/MD5E-s176977--df491d964fb89ef253be8db9e2908ad7.nii.gz/MD5E-s176977--df491d964fb89ef253be8db9e2908ad7.nii.gz

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/9G/MD5E-s239191--d5a747598be1077cfcf39300428d1960.nii.gz/MD5E-s239191--d5a747598be1077cfcf39300428d1960.nii.gz

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025840/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xV/WW/MD5E-s265700--1b2fe96a46ce2a9807d3c2394349cb44.nii.gz/MD5E-s265700--1b2fe96a46ce2a9807d3c2394349cb44.nii.gz

SWU_4/sub-0025840/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025840/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/mk/MD5E-s24619--d5f0225f8ffeb2ea822832d15dea4d9b.nii.gz/MD5E-s24619--d5f0225f8ffeb2ea822832d15dea4d9b.nii.gz

SWU_4/sub-0025840/ses-1/mri/aal3_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025840/ses-1/mri/aal3_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/Qp/MD5E-s178636--265f8e98b747c8b4eccf280257ab1c71.nii.gz/MD5E-s178636--265f8e98b747c8b4eccf280257ab1c71.nii.gz

SWU_4/sub-0025840/ses-1/mri/anatomy3_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025840/ses-1/mri/anatomy3_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/2p/MD5E-s130370--c8b841ecfe81f51745e3fb816ef08cf8.nii.gz/MD5E-s130370--c8b841ecfe81f51745e3fb816ef08cf8.nii.gz

SWU_4/sub-0025840/ses-1/mri/anon_misub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/9v/MD5E-s8844463--a81181463c539fc09dcbc58e5ce2bca2.nii.gz/MD5E-s8844463--a81181463c539fc09dcbc58e5ce2bca2.nii.gz

SWU_4/sub-0025840/ses-1/mri/anon_msub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/23/zV/MD5E-s10266513--f48b2dea638da2bc0ece6ba2dfe5dca6.nii.gz/MD5E-s10266513--f48b2dea638da2bc0ece6ba2dfe5dca6.nii.gz

SWU_4/sub-0025840/ses-1/mri/cat_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/Mv/MD5E-s95502--2b4346402378d8102a6322a547d7201f.nii.gz/MD5E-s95502--2b4346402378d8102a6322a547d7201f.nii.gz

SWU_4/sub-0025840/ses-1/mri/cobra_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025840/ses-1/mri/cobra_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/Vk/MD5E-s48282--6fc4fcf80aacec33627a87b4eb8c1f9b.nii.gz/MD5E-s48282--6fc4fcf80aacec33627a87b4eb8c1f9b.nii.gz

SWU_4/sub-0025840/ses-1/mri/hammers_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025840/ses-1/mri/hammers_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/f1/MD5E-s141179--cb6e31edaf0df6ca691867cbd76c9278.nii.gz/MD5E-s141179--cb6e31edaf0df6ca691867cbd76c9278.nii.gz

SWU_4/sub-0025840/ses-1/mri/ibsr_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025840/ses-1/mri/ibsr_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/Xx/MD5E-s149716--7aec73a619be7ca59fd4f0d7bcb7bcf4.nii.gz/MD5E-s149716--7aec73a619be7ca59fd4f0d7bcb7bcf4.nii.gz

SWU_4/sub-0025840/ses-1/mri/it_sub-0025840_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/QW/MD5E-s284--fe3e28528f289d1869406a71983c869a.mat/MD5E-s284--fe3e28528f289d1869406a71983c869a.mat

SWU_4/sub-0025840/ses-1/mri/it_sub-0025840_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/zW/MD5E-s283--8dd16637be0c2350d03b6ba9fb32fa6d.mat/MD5E-s283--8dd16637be0c2350d03b6ba9fb32fa6d.mat

SWU_4/sub-0025840/ses-1/mri/iy_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/k1/MD5E-s42257614--238a0042b3cf15556ad949cae4415e74.nii.gz/MD5E-s42257614--238a0042b3cf15556ad949cae4415e74.nii.gz

SWU_4/sub-0025840/ses-1/mri/julichbrain_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025840/ses-1/mri/julichbrain_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/4V/MD5E-s189370--e08b7878e72a4f20a29792e1885f1e89.nii.gz/MD5E-s189370--e08b7878e72a4f20a29792e1885f1e89.nii.gz

SWU_4/sub-0025840/ses-1/mri/lpba40_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025840/ses-1/mri/lpba40_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/mJ/MD5E-s138337--0ae82a6c1b517f5700c1c0c3d1d8eb8f.nii.gz/MD5E-s138337--0ae82a6c1b517f5700c1c0c3d1d8eb8f.nii.gz

SWU_4/sub-0025840/ses-1/mri/m0wp1sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/MQ/MD5E-s2582659--b96b5f0fd0cca256a67e5e6bfe039634.nii.gz/MD5E-s2582659--b96b5f0fd0cca256a67e5e6bfe039634.nii.gz

SWU_4/sub-0025840/ses-1/mri/m0wp2sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/xk/MD5E-s2281926--95f7fa1ce287fbb63bbae30e2d396b1f.nii.gz/MD5E-s2281926--95f7fa1ce287fbb63bbae30e2d396b1f.nii.gz

SWU_4/sub-0025840/ses-1/mri/m0wp3sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/11/MD5E-s2521287--f2b454b1cba0d193561892107bdd918f.nii.gz/MD5E-s2521287--f2b454b1cba0d193561892107bdd918f.nii.gz

SWU_4/sub-0025840/ses-1/mri/mori_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025840/ses-1/mri/mori_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/16/MD5E-s165201--832bbf6b74abd57d34a58d74e3adcf69.nii.gz/MD5E-s165201--832bbf6b74abd57d34a58d74e3adcf69.nii.gz

SWU_4/sub-0025840/ses-1/mri/mwp1sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/vG/MD5E-s2589093--956d66face317d002f40f30cd6336a8f.nii.gz/MD5E-s2589093--956d66face317d002f40f30cd6336a8f.nii.gz

SWU_4/sub-0025840/ses-1/mri/mwp2sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/wx/MD5E-s2282485--7b5697d0c8bff0466b4d329fa906f4a6.nii.gz/MD5E-s2282485--7b5697d0c8bff0466b4d329fa906f4a6.nii.gz

SWU_4/sub-0025840/ses-1/mri/mwp3sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/qx/MD5E-s2518069--7c58c4596415808610068f2bae061c92.nii.gz/MD5E-s2518069--7c58c4596415808610068f2bae061c92.nii.gz

SWU_4/sub-0025840/ses-1/mri/neuromorphometrics_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025840/ses-1/mri/neuromorphometrics_sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/k5/MD5E-s191619--78581903f8a02bc93df7633ab7b24cc1.nii.gz/MD5E-s191619--78581903f8a02bc93df7633ab7b24cc1.nii.gz

SWU_4/sub-0025840/ses-1/mri/p0sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/Jk/MD5E-s575565--9964f4e5a547e59c95d21b45272fe8ea.nii.gz/MD5E-s575565--9964f4e5a547e59c95d21b45272fe8ea.nii.gz

SWU_4/sub-0025840/ses-1/mri/p1sub-0025840_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/01/MD5E-s609515--7adb727e10da4d97a85b3dc0a2d3ac75.nii.gz/MD5E-s609515--7adb727e10da4d97a85b3dc0a2d3ac75.nii.gz

SWU_4/sub-0025840/ses-1/mri/p2sub-0025840_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025840/ses-1/mri/p3sub-0025840_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025840/ses-1/mri/rp1sub-0025840_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025840/ses-1/mri/rp2sub-0025840_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025840/ses-1/mri/rp3sub-0025840_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025840/ses-1/mri/t_sub-0025840_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/w9/MD5E-s283--4bc618c6cf191a1820d588e066cb2de4.mat/MD5E-s283--4bc618c6cf191a1820d588e066cb2de4.mat

SWU_4/sub-0025840/ses-1/mri/t_sub-0025840_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025840/ses-1/mri/thalamus_sub-0025840_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025840/ses-1/mri/thalamus_sub-0025840_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025840/ses-1/surf/lh.edgemap32k.sub-0025840_ses-1_run-1_T1w.mat

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