[DATALAD RUNCMD] Compute SWU_4/sub-0025704/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025704/ses-2/anat/sub-0025704_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025704/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025704/ses-2/label/catROI_sub-0025704_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/0m/MD5E-s58116--2ac8ca2b37b696788ca3a8df0286d28f.mat/MD5E-s58116--2ac8ca2b37b696788ca3a8df0286d28f.mat

SWU_4/sub-0025704/ses-2/label/catROI_sub-0025704_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/Vp/MD5E-s188654--880f1562f9f65a0b10331c19dea45c06.xml/MD5E-s188654--880f1562f9f65a0b10331c19dea45c06.xml

SWU_4/sub-0025704/ses-2/label/catROIs_sub-0025704_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/k2/MD5E-s119995--c77720949ae78c09707dcb5ce60eaa8a.mat/MD5E-s119995--c77720949ae78c09707dcb5ce60eaa8a.mat

SWU_4/sub-0025704/ses-2/label/catROIs_sub-0025704_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/m0/MD5E-s332207--92f3bd16639593e99e418ad9463d2149.xml/MD5E-s332207--92f3bd16639593e99e418ad9463d2149.xml

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/Z8/MD5E-s186522--d03fdf9bcc21d53af2dd6b5bbb1ad4b4.nii.gz/MD5E-s186522--d03fdf9bcc21d53af2dd6b5bbb1ad4b4.nii.gz

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/kK/MD5E-s211459--e6637ca8d948f52806a82f5ff18d4dbc.nii.gz/MD5E-s211459--e6637ca8d948f52806a82f5ff18d4dbc.nii.gz

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/W5/MD5E-s283573--4932de449cac82e0a1efe4a78314f5d9.nii.gz/MD5E-s283573--4932de449cac82e0a1efe4a78314f5d9.nii.gz

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025704/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/V6/MD5E-s316596--56a61e46e8518cd867fe1ee99e9e1a1f.nii.gz/MD5E-s316596--56a61e46e8518cd867fe1ee99e9e1a1f.nii.gz

SWU_4/sub-0025704/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025704/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/mp/MD5E-s26263--e7baab4c2de55586e58e4b6ef96635b6.nii.gz/MD5E-s26263--e7baab4c2de55586e58e4b6ef96635b6.nii.gz

SWU_4/sub-0025704/ses-2/mri/aal3_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025704/ses-2/mri/aal3_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/Q7/MD5E-s209706--8de4d3db53c1cba986b496fb747974aa.nii.gz/MD5E-s209706--8de4d3db53c1cba986b496fb747974aa.nii.gz

SWU_4/sub-0025704/ses-2/mri/anatomy3_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025704/ses-2/mri/anatomy3_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/g7/MD5E-s154254--614093ead26e7c7ebff45ad7d1791a88.nii.gz/MD5E-s154254--614093ead26e7c7ebff45ad7d1791a88.nii.gz

SWU_4/sub-0025704/ses-2/mri/anon_misub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/Fv/MD5E-s12014944--c2a695aa14fb57fad0c2654cd65328e0.nii.gz/MD5E-s12014944--c2a695aa14fb57fad0c2654cd65328e0.nii.gz

SWU_4/sub-0025704/ses-2/mri/anon_msub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0v/M5/MD5E-s13055446--07760ae39402ce0f4c624d11ba2df4ee.nii.gz/MD5E-s13055446--07760ae39402ce0f4c624d11ba2df4ee.nii.gz

SWU_4/sub-0025704/ses-2/mri/cat_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Q/JK/MD5E-s114242--7050c6b66ff141da5d75e2ada9718417.nii.gz/MD5E-s114242--7050c6b66ff141da5d75e2ada9718417.nii.gz

SWU_4/sub-0025704/ses-2/mri/cobra_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025704/ses-2/mri/cobra_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/Gx/MD5E-s51687--11cfccd73fcd9cc028dd3fbf1adde0d4.nii.gz/MD5E-s51687--11cfccd73fcd9cc028dd3fbf1adde0d4.nii.gz

SWU_4/sub-0025704/ses-2/mri/hammers_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025704/ses-2/mri/hammers_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/kV/MD5E-s168356--d12c960b7a3ae98ed7a92adb304aa8c1.nii.gz/MD5E-s168356--d12c960b7a3ae98ed7a92adb304aa8c1.nii.gz

SWU_4/sub-0025704/ses-2/mri/ibsr_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025704/ses-2/mri/ibsr_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/61/MD5E-s175731--fe9159c5193454f9ccad8ae0835dc18b.nii.gz/MD5E-s175731--fe9159c5193454f9ccad8ae0835dc18b.nii.gz

SWU_4/sub-0025704/ses-2/mri/it_sub-0025704_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/vf/MD5E-s283--ecbfa52cc0728b53cb82e4d493d5a30e.mat/MD5E-s283--ecbfa52cc0728b53cb82e4d493d5a30e.mat

SWU_4/sub-0025704/ses-2/mri/it_sub-0025704_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mm/8W/MD5E-s283--cb74ae9379207fe2ae33aa269214c9c6.mat/MD5E-s283--cb74ae9379207fe2ae33aa269214c9c6.mat

SWU_4/sub-0025704/ses-2/mri/iy_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/jm/MD5E-s54131893--e67c204e51dd6a4662e6fbadbc0cb990.nii.gz/MD5E-s54131893--e67c204e51dd6a4662e6fbadbc0cb990.nii.gz

SWU_4/sub-0025704/ses-2/mri/julichbrain_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025704/ses-2/mri/julichbrain_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/3f/MD5E-s227070--a0251a88ef5148e60bc47b6e72a1da1f.nii.gz/MD5E-s227070--a0251a88ef5148e60bc47b6e72a1da1f.nii.gz

SWU_4/sub-0025704/ses-2/mri/lpba40_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025704/ses-2/mri/lpba40_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/2v/MD5E-s164631--8b6b0d9303e5840cf0ddd0d304a32079.nii.gz/MD5E-s164631--8b6b0d9303e5840cf0ddd0d304a32079.nii.gz

SWU_4/sub-0025704/ses-2/mri/m0wp1sub-0025704_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Gq/fM/MD5E-s2572988--532c7f9a71c122ddd547b1527f2e2888.nii.gz/MD5E-s2572988--532c7f9a71c122ddd547b1527f2e2888.nii.gz

SWU_4/sub-0025704/ses-2/mri/m0wp2sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/xZ/MD5E-s2350942--06ba9d0753b9359dcb2fada285c1f064.nii.gz/MD5E-s2350942--06ba9d0753b9359dcb2fada285c1f064.nii.gz

SWU_4/sub-0025704/ses-2/mri/m0wp3sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/zX/MD5E-s2574610--4031ae0783732b3115b98e1e26aa9c59.nii.gz/MD5E-s2574610--4031ae0783732b3115b98e1e26aa9c59.nii.gz

SWU_4/sub-0025704/ses-2/mri/mori_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025704/ses-2/mri/mori_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/x9/MD5E-s194374--3cddcd455f46682bbe462fec479924a4.nii.gz/MD5E-s194374--3cddcd455f46682bbe462fec479924a4.nii.gz

SWU_4/sub-0025704/ses-2/mri/mwp1sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/Vj/MD5E-s2572547--fce6d84789e70ad840e83f86dafcdad3.nii.gz/MD5E-s2572547--fce6d84789e70ad840e83f86dafcdad3.nii.gz

SWU_4/sub-0025704/ses-2/mri/mwp2sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/vG/MD5E-s2347234--19a7f7cd78340637078b3c86e226ee4d.nii.gz/MD5E-s2347234--19a7f7cd78340637078b3c86e226ee4d.nii.gz

SWU_4/sub-0025704/ses-2/mri/mwp3sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/5K/MD5E-s2571385--fa3de224428cf17bedfe1323e33e7e47.nii.gz/MD5E-s2571385--fa3de224428cf17bedfe1323e33e7e47.nii.gz

SWU_4/sub-0025704/ses-2/mri/neuromorphometrics_sub-0025704_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025704/ses-2/mri/neuromorphometrics_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025704/ses-2/mri/p0sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/q4/MD5E-s777557--4c880179f735c8f937118120cdc479cc.nii.gz/MD5E-s777557--4c880179f735c8f937118120cdc479cc.nii.gz

SWU_4/sub-0025704/ses-2/mri/p1sub-0025704_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025704/ses-2/mri/p2sub-0025704_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025704/ses-2/mri/p3sub-0025704_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025704/ses-2/mri/rp1sub-0025704_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025704/ses-2/mri/rp2sub-0025704_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025704/ses-2/mri/rp3sub-0025704_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025704/ses-2/mri/t_sub-0025704_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025704/ses-2/mri/t_sub-0025704_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025704/ses-2/mri/thalamus_sub-0025704_ses-2_run-1_T1w.csv

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SWU_4/sub-0025704/ses-2/mri/thalamus_sub-0025704_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025704/ses-2/mri/wj_sub-0025704_ses-2_run-1_T1w.nii.gz

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