[DATALAD RUNCMD] Compute NYU_2/sub-0025131/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025131/ses-1/anat/sub-0025131_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025131/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025131/ses-1/label/catROI_sub-0025131_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/Ff/MD5E-s58051--ca1f8739dfaa717d0ef83b8b1060d625.mat/MD5E-s58051--ca1f8739dfaa717d0ef83b8b1060d625.mat

NYU_2/sub-0025131/ses-1/label/catROI_sub-0025131_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xx/GJ/MD5E-s188498--076b0d08ef202ce3ff422ed86c228859.xml/MD5E-s188498--076b0d08ef202ce3ff422ed86c228859.xml

NYU_2/sub-0025131/ses-1/label/catROIs_sub-0025131_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/8x/MD5E-s120308--719479eff23ed6ea5351623c2e48a0f4.mat/MD5E-s120308--719479eff23ed6ea5351623c2e48a0f4.mat

NYU_2/sub-0025131/ses-1/label/catROIs_sub-0025131_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/Vv/MD5E-s332188--edecb906815c66c9cf205612dd96ad64.xml/MD5E-s332188--edecb906815c66c9cf205612dd96ad64.xml

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/Zf/MD5E-s159781--8128e633658292c3655c7e8013231dfb.nii.gz/MD5E-s159781--8128e633658292c3655c7e8013231dfb.nii.gz

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/4k/MD5E-s179175--c796f5cf26cb1256d6247136d4644e4e.nii.gz/MD5E-s179175--c796f5cf26cb1256d6247136d4644e4e.nii.gz

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/xz/MD5E-s238296--4aefd3fe5a68a5835953c4a1a1bb794a.nii.gz/MD5E-s238296--4aefd3fe5a68a5835953c4a1a1bb794a.nii.gz

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025131/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/J5/MD5E-s267341--2858aa0871ec2f5e531685b561eff295.nii.gz/MD5E-s267341--2858aa0871ec2f5e531685b561eff295.nii.gz

NYU_2/sub-0025131/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025131/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/vX/MD5E-s20144--12fac46abfd32d6c44c10917ba4feaf3.nii.gz/MD5E-s20144--12fac46abfd32d6c44c10917ba4feaf3.nii.gz

NYU_2/sub-0025131/ses-1/mri/aal3_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025131/ses-1/mri/aal3_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/54/MD5E-s181161--5920b2f9557bd83a8b5844bd069f4cf2.nii.gz/MD5E-s181161--5920b2f9557bd83a8b5844bd069f4cf2.nii.gz

NYU_2/sub-0025131/ses-1/mri/anatomy3_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025131/ses-1/mri/anatomy3_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/jg/MD5E-s127741--63d785249eeb37d33b93ead8f8244024.nii.gz/MD5E-s127741--63d785249eeb37d33b93ead8f8244024.nii.gz

NYU_2/sub-0025131/ses-1/mri/anon_misub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/18/MD5E-s4038614--475ee25fb35578b0e881047d3d7e7a9e.nii.gz/MD5E-s4038614--475ee25fb35578b0e881047d3d7e7a9e.nii.gz

NYU_2/sub-0025131/ses-1/mri/anon_msub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PV/JX/MD5E-s8078019--a5795a8c4ea1dac65866acee97456558.nii.gz/MD5E-s8078019--a5795a8c4ea1dac65866acee97456558.nii.gz

NYU_2/sub-0025131/ses-1/mri/cat_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/g8/MD5E-s96526--a56c198ec8e238230405a0792a6dd504.nii.gz/MD5E-s96526--a56c198ec8e238230405a0792a6dd504.nii.gz

NYU_2/sub-0025131/ses-1/mri/cobra_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025131/ses-1/mri/cobra_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/8k/MD5E-s43190--17bc9e120a2ef2eb4d3e4cda372c7a11.nii.gz/MD5E-s43190--17bc9e120a2ef2eb4d3e4cda372c7a11.nii.gz

NYU_2/sub-0025131/ses-1/mri/hammers_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025131/ses-1/mri/hammers_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/1M/MD5E-s140406--65f4dc1f2356b2012ae6876ff2b5526c.nii.gz/MD5E-s140406--65f4dc1f2356b2012ae6876ff2b5526c.nii.gz

NYU_2/sub-0025131/ses-1/mri/ibsr_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025131/ses-1/mri/ibsr_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kK/Q1/MD5E-s148862--9e4c0345f487b508318680187164a38e.nii.gz/MD5E-s148862--9e4c0345f487b508318680187164a38e.nii.gz

NYU_2/sub-0025131/ses-1/mri/it_sub-0025131_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/39/MD5E-s282--2c91247958ba7c3fdeae02bc080f10ad.mat/MD5E-s282--2c91247958ba7c3fdeae02bc080f10ad.mat

NYU_2/sub-0025131/ses-1/mri/it_sub-0025131_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/qm/MD5E-s283--688f397bae03c79a62e07dc540a17b48.mat/MD5E-s283--688f397bae03c79a62e07dc540a17b48.mat

NYU_2/sub-0025131/ses-1/mri/iy_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/Gf/MD5E-s37646269--25657768d606f47513c4748f8a647919.nii.gz/MD5E-s37646269--25657768d606f47513c4748f8a647919.nii.gz

NYU_2/sub-0025131/ses-1/mri/julichbrain_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025131/ses-1/mri/julichbrain_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/10/MD5E-s190344--cc7b4cdb3a7ad056922b666386d9b280.nii.gz/MD5E-s190344--cc7b4cdb3a7ad056922b666386d9b280.nii.gz

NYU_2/sub-0025131/ses-1/mri/lpba40_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025131/ses-1/mri/lpba40_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/j2/MD5E-s137579--f6af1ab38430af2abe17dfd3285073de.nii.gz/MD5E-s137579--f6af1ab38430af2abe17dfd3285073de.nii.gz

NYU_2/sub-0025131/ses-1/mri/m0wp1sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/Qw/MD5E-s2612042--405cc29e645a2572ef14df89c1e7343e.nii.gz/MD5E-s2612042--405cc29e645a2572ef14df89c1e7343e.nii.gz

NYU_2/sub-0025131/ses-1/mri/m0wp2sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/XW/MD5E-s2281030--3a451a4d27e3327f34265e8ec5134912.nii.gz/MD5E-s2281030--3a451a4d27e3327f34265e8ec5134912.nii.gz

NYU_2/sub-0025131/ses-1/mri/m0wp3sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/Qx/MD5E-s2269267--4afa7bada10451921811ea99852f770f.nii.gz/MD5E-s2269267--4afa7bada10451921811ea99852f770f.nii.gz

NYU_2/sub-0025131/ses-1/mri/mori_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025131/ses-1/mri/mori_sub-0025131_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025131/ses-1/mri/mwp1sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/jv/MD5E-s2612737--85292a652a83b49a37f3a9c07406d07d.nii.gz/MD5E-s2612737--85292a652a83b49a37f3a9c07406d07d.nii.gz

NYU_2/sub-0025131/ses-1/mri/mwp2sub-0025131_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025131/ses-1/mri/mwp3sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025131/ses-1/mri/neuromorphometrics_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025131/ses-1/mri/neuromorphometrics_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025131/ses-1/mri/p0sub-0025131_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025131/ses-1/mri/p1sub-0025131_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025131/ses-1/mri/p2sub-0025131_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025131/ses-1/mri/p3sub-0025131_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025131/ses-1/mri/rp1sub-0025131_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025131/ses-1/mri/rp2sub-0025131_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025131/ses-1/mri/rp3sub-0025131_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025131/ses-1/mri/t_sub-0025131_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025131/ses-1/mri/t_sub-0025131_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025131/ses-1/mri/thalamus_sub-0025131_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025131/ses-1/mri/thalamus_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025131/ses-1/mri/wj_sub-0025131_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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