[DATALAD RUNCMD] Compute BMB_1/sub-0003038/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003038/ses-1/anat/sub-0003038_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003038/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003038/ses-1/label/catROI_sub-0003038_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/kp/MD5E-s61333--77a2bc70871b11e1165b3b4440421d91.mat/MD5E-s61333--77a2bc70871b11e1165b3b4440421d91.mat

BMB_1/sub-0003038/ses-1/label/catROI_sub-0003038_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/23/MD5E-s188897--05275f2b0428a6236e2844c1c78db58b.xml/MD5E-s188897--05275f2b0428a6236e2844c1c78db58b.xml

BMB_1/sub-0003038/ses-1/label/catROIs_sub-0003038_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/58/MD5E-s120062--af54cdf1ea067d668d275418ab5c8165.mat/MD5E-s120062--af54cdf1ea067d668d275418ab5c8165.mat

BMB_1/sub-0003038/ses-1/label/catROIs_sub-0003038_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/mQ/MD5E-s332170--55e546c746fdbefbfb10ef6a0c0b1442.xml/MD5E-s332170--55e546c746fdbefbfb10ef6a0c0b1442.xml

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/z1/MD5E-s176717--7f14928f9f30483e5374a8630be6a677.nii.gz/MD5E-s176717--7f14928f9f30483e5374a8630be6a677.nii.gz

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/j6/MD5E-s198575--2716d902a9559c0cc451a4d167468efd.nii.gz/MD5E-s198575--2716d902a9559c0cc451a4d167468efd.nii.gz

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/g0/MD5E-s267248--1346c19426b723ae94765f674f0de076.nii.gz/MD5E-s267248--1346c19426b723ae94765f674f0de076.nii.gz

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003038/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/8X/MD5E-s299084--cb248669914f5718d345f0fff5cb89c5.nii.gz/MD5E-s299084--cb248669914f5718d345f0fff5cb89c5.nii.gz

BMB_1/sub-0003038/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003038/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/w1/MD5E-s25383--6c767ee611cd6231a86922d7f701cfbf.nii.gz/MD5E-s25383--6c767ee611cd6231a86922d7f701cfbf.nii.gz

BMB_1/sub-0003038/ses-1/mri/aal3_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003038/ses-1/mri/aal3_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/zv/MD5E-s199403--f4a9169f3e9cb8b7064ae6726fe2316f.nii.gz/MD5E-s199403--f4a9169f3e9cb8b7064ae6726fe2316f.nii.gz

BMB_1/sub-0003038/ses-1/mri/anatomy3_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003038/ses-1/mri/anatomy3_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/3Q/MD5E-s145148--047b367acb2549cfce943a27b105f4f6.nii.gz/MD5E-s145148--047b367acb2549cfce943a27b105f4f6.nii.gz

BMB_1/sub-0003038/ses-1/mri/anon_misub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/5p/MD5E-s6602893--e0d1b14f36cd72fc8e409f5c616a4645.nii.gz/MD5E-s6602893--e0d1b14f36cd72fc8e409f5c616a4645.nii.gz

BMB_1/sub-0003038/ses-1/mri/anon_msub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/0V/MD5E-s13854794--f16a47dc1740f650f145733034c88e7b.nii.gz/MD5E-s13854794--f16a47dc1740f650f145733034c88e7b.nii.gz

BMB_1/sub-0003038/ses-1/mri/cat_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f2/j9/MD5E-s108823--6f8c7d819ee34aa991788bc080113822.nii.gz/MD5E-s108823--6f8c7d819ee34aa991788bc080113822.nii.gz

BMB_1/sub-0003038/ses-1/mri/cobra_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003038/ses-1/mri/cobra_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/9Q/MD5E-s50056--82316f5008ff4c6d793b18df6d341c7c.nii.gz/MD5E-s50056--82316f5008ff4c6d793b18df6d341c7c.nii.gz

BMB_1/sub-0003038/ses-1/mri/hammers_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003038/ses-1/mri/hammers_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/wm/MD5E-s157147--138b2825ae2edd951749094402d2bd8f.nii.gz/MD5E-s157147--138b2825ae2edd951749094402d2bd8f.nii.gz

BMB_1/sub-0003038/ses-1/mri/ibsr_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003038/ses-1/mri/ibsr_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/00/MD5E-s166494--cdef1c1b4957776e1794322f8e1d6ab1.nii.gz/MD5E-s166494--cdef1c1b4957776e1794322f8e1d6ab1.nii.gz

BMB_1/sub-0003038/ses-1/mri/it_sub-0003038_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/4w/MD5E-s281--16d6d811cfbd4aa1d5d8e8e14056cac6.mat/MD5E-s281--16d6d811cfbd4aa1d5d8e8e14056cac6.mat

BMB_1/sub-0003038/ses-1/mri/it_sub-0003038_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2J/m2/MD5E-s281--35b794df39607d8276d1eab5bd664058.mat/MD5E-s281--35b794df39607d8276d1eab5bd664058.mat

BMB_1/sub-0003038/ses-1/mri/iy_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/5X/MD5E-s50290734--963db04904a0847d1d2d2bee992ffb84.nii.gz/MD5E-s50290734--963db04904a0847d1d2d2bee992ffb84.nii.gz

BMB_1/sub-0003038/ses-1/mri/julichbrain_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003038/ses-1/mri/julichbrain_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/4M/MD5E-s212457--f93be52212a77d8086b7922b7078e7fe.nii.gz/MD5E-s212457--f93be52212a77d8086b7922b7078e7fe.nii.gz

BMB_1/sub-0003038/ses-1/mri/lpba40_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003038/ses-1/mri/lpba40_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/JK/MD5E-s153632--e7279bac4672c93c59f6e22004c606a8.nii.gz/MD5E-s153632--e7279bac4672c93c59f6e22004c606a8.nii.gz

BMB_1/sub-0003038/ses-1/mri/m0wp1sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/Mj/MD5E-s2581203--6228c7d008f04049dc7de51d52bdcc3a.nii.gz/MD5E-s2581203--6228c7d008f04049dc7de51d52bdcc3a.nii.gz

BMB_1/sub-0003038/ses-1/mri/m0wp2sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/1W/MD5E-s2296357--f220ff09aad127b07cc041c04f455c1a.nii.gz/MD5E-s2296357--f220ff09aad127b07cc041c04f455c1a.nii.gz

BMB_1/sub-0003038/ses-1/mri/m0wp3sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/44/MD5E-s2508255--9a3d8baf017cd1157b3ee2aac55545fb.nii.gz/MD5E-s2508255--9a3d8baf017cd1157b3ee2aac55545fb.nii.gz

BMB_1/sub-0003038/ses-1/mri/mori_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003038/ses-1/mri/mori_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KZ/30/MD5E-s184327--f31fbf4c3f5c87888505ce4be5292f4a.nii.gz/MD5E-s184327--f31fbf4c3f5c87888505ce4be5292f4a.nii.gz

BMB_1/sub-0003038/ses-1/mri/mwp1sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/9g/MD5E-s2583086--e743dd0035ef8c9760ba9a206dd9ab03.nii.gz/MD5E-s2583086--e743dd0035ef8c9760ba9a206dd9ab03.nii.gz

BMB_1/sub-0003038/ses-1/mri/mwp2sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/F9/MD5E-s2296918--0091e7197fb2bb8f8869915eee7994b1.nii.gz/MD5E-s2296918--0091e7197fb2bb8f8869915eee7994b1.nii.gz

BMB_1/sub-0003038/ses-1/mri/mwp3sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/G9/MD5E-s2507057--76257dd900049c938176dc273d1535eb.nii.gz/MD5E-s2507057--76257dd900049c938176dc273d1535eb.nii.gz

BMB_1/sub-0003038/ses-1/mri/neuromorphometrics_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003038/ses-1/mri/neuromorphometrics_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/16/MD5E-s212977--c26724ce08a0a39b0833b254512c54ec.nii.gz/MD5E-s212977--c26724ce08a0a39b0833b254512c54ec.nii.gz

BMB_1/sub-0003038/ses-1/mri/p0sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/k4/MD5E-s676186--e652f55817ec79773ea27c6484f80db9.nii.gz/MD5E-s676186--e652f55817ec79773ea27c6484f80db9.nii.gz

BMB_1/sub-0003038/ses-1/mri/p1sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/Vm/MD5E-s717295--72d6937dbae2a56ac721125f1db87b96.nii.gz/MD5E-s717295--72d6937dbae2a56ac721125f1db87b96.nii.gz

BMB_1/sub-0003038/ses-1/mri/p2sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/55/MD5E-s467544--a70cd60ce3c654885a692f6682d7d376.nii.gz/MD5E-s467544--a70cd60ce3c654885a692f6682d7d376.nii.gz

BMB_1/sub-0003038/ses-1/mri/p3sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/j4/MD5E-s415199--f0ed03dbf67e63f00dc85684c00b4aa1.nii.gz/MD5E-s415199--f0ed03dbf67e63f00dc85684c00b4aa1.nii.gz

BMB_1/sub-0003038/ses-1/mri/rp1sub-0003038_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wj/K4/MD5E-s439926--34deef94b7b1d73bfa2d5bb04cb12c2d.nii.gz/MD5E-s439926--34deef94b7b1d73bfa2d5bb04cb12c2d.nii.gz

BMB_1/sub-0003038/ses-1/mri/rp2sub-0003038_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/Kz/MD5E-s298755--2db2e7913c70b5cbd13b1b27274cee2c.nii.gz/MD5E-s298755--2db2e7913c70b5cbd13b1b27274cee2c.nii.gz

BMB_1/sub-0003038/ses-1/mri/rp3sub-0003038_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/z6/MD5E-s280994--76b5a523ae6d9cd5794a66694bd3ef06.nii.gz/MD5E-s280994--76b5a523ae6d9cd5794a66694bd3ef06.nii.gz

BMB_1/sub-0003038/ses-1/mri/t_sub-0003038_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/2m/MD5E-s283--c9e1a59b2fa9682fdb8f03880b22bd55.mat/MD5E-s283--c9e1a59b2fa9682fdb8f03880b22bd55.mat

BMB_1/sub-0003038/ses-1/mri/t_sub-0003038_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/Gk/MD5E-s281--4ba20f9a37986046f07d9fc9026e4812.mat/MD5E-s281--4ba20f9a37986046f07d9fc9026e4812.mat

BMB_1/sub-0003038/ses-1/mri/thalamus_sub-0003038_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003038/ses-1/mri/thalamus_sub-0003038_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003038/ses-1/mri/wj_sub-0003038_ses-1_run-1_T1w.nii.gz

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