[DATALAD RUNCMD] Compute MRN/sub-0027051/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027051/ses-1/anat/sub-0027051_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027051/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027051/ses-1/label/catROI_sub-0027051_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/xj/MD5E-s61296--fe287ec485e04eba0643a6512faeca38.mat/MD5E-s61296--fe287ec485e04eba0643a6512faeca38.mat

MRN/sub-0027051/ses-1/label/catROI_sub-0027051_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/m8/MD5E-s188577--f881f9b78e004ab4f21ec0d8e7e2f3da.xml/MD5E-s188577--f881f9b78e004ab4f21ec0d8e7e2f3da.xml

MRN/sub-0027051/ses-1/label/catROIs_sub-0027051_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/gf/MD5E-s120018--3ca0a7fb8373503eb9cd25b046d27871.mat/MD5E-s120018--3ca0a7fb8373503eb9cd25b046d27871.mat

MRN/sub-0027051/ses-1/label/catROIs_sub-0027051_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q4/48/MD5E-s332132--2537e81b88f81a5d374ac6e18256d9f9.xml/MD5E-s332132--2537e81b88f81a5d374ac6e18256d9f9.xml

MRN/sub-0027051/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027051/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/7F/MD5E-s188902--d8e6750031a2ecd19571daec81e6e32d.nii.gz/MD5E-s188902--d8e6750031a2ecd19571daec81e6e32d.nii.gz

MRN/sub-0027051/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027051/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/5J/MD5E-s211091--797ba91e5bb060016dd10f5e5f2f3460.nii.gz/MD5E-s211091--797ba91e5bb060016dd10f5e5f2f3460.nii.gz

MRN/sub-0027051/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027051/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/fZ/MD5E-s280091--ca1b2190528cccfdcf7fffe3de2ceb55.nii.gz/MD5E-s280091--ca1b2190528cccfdcf7fffe3de2ceb55.nii.gz

MRN/sub-0027051/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027051/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/qQ/MD5E-s311598--464f77943fe5006e84584e600f2f20f6.nii.gz/MD5E-s311598--464f77943fe5006e84584e600f2f20f6.nii.gz

MRN/sub-0027051/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027051/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0v/v7/MD5E-s27363--f6031f88916f878c08cee03f193b2cfd.nii.gz/MD5E-s27363--f6031f88916f878c08cee03f193b2cfd.nii.gz

MRN/sub-0027051/ses-1/mri/aal3_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MRN/sub-0027051/ses-1/mri/aal3_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/Pq/MD5E-s211225--3cfcfff1237dc6d1c183acb2eec9cf56.nii.gz/MD5E-s211225--3cfcfff1237dc6d1c183acb2eec9cf56.nii.gz

MRN/sub-0027051/ses-1/mri/anatomy3_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027051/ses-1/mri/anatomy3_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/3P/MD5E-s154062--7c26f220f8c1e3c4d8990b926bb0e323.nii.gz/MD5E-s154062--7c26f220f8c1e3c4d8990b926bb0e323.nii.gz

MRN/sub-0027051/ses-1/mri/anon_misub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/3v/MD5E-s10764393--9eecba25c1c85c59459c36677c6f1da7.nii.gz/MD5E-s10764393--9eecba25c1c85c59459c36677c6f1da7.nii.gz

MRN/sub-0027051/ses-1/mri/anon_msub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/Gz/MD5E-s11812399--4b51943b9608a160bed302d3e9b2ea6c.nii.gz/MD5E-s11812399--4b51943b9608a160bed302d3e9b2ea6c.nii.gz

MRN/sub-0027051/ses-1/mri/cat_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/xv/MD5E-s111749--8563a9da6abe87f25e2dffd759f0e27b.nii.gz/MD5E-s111749--8563a9da6abe87f25e2dffd759f0e27b.nii.gz

MRN/sub-0027051/ses-1/mri/cobra_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027051/ses-1/mri/cobra_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/qm/MD5E-s53685--5470025e71b5dfcdaaceb2b91cfe0d71.nii.gz/MD5E-s53685--5470025e71b5dfcdaaceb2b91cfe0d71.nii.gz

MRN/sub-0027051/ses-1/mri/hammers_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027051/ses-1/mri/hammers_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/Gw/MD5E-s164596--73c41bab882ecc18c2796544f1c1387a.nii.gz/MD5E-s164596--73c41bab882ecc18c2796544f1c1387a.nii.gz

MRN/sub-0027051/ses-1/mri/ibsr_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027051/ses-1/mri/ibsr_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/Xv/MD5E-s174846--36ffadec7cc40f45dd2ec8d03885e4b7.nii.gz/MD5E-s174846--36ffadec7cc40f45dd2ec8d03885e4b7.nii.gz

MRN/sub-0027051/ses-1/mri/it_sub-0027051_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/2K/MD5E-s282--30c8941baad624a04172323d51bc9fed.mat/MD5E-s282--30c8941baad624a04172323d51bc9fed.mat

MRN/sub-0027051/ses-1/mri/it_sub-0027051_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/gZ/MD5E-s282--de4a4336adf01f4ed230376adb5879e2.mat/MD5E-s282--de4a4336adf01f4ed230376adb5879e2.mat

MRN/sub-0027051/ses-1/mri/iy_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/4g/MD5E-s54007380--4069f2398c006ae649f8218321cd6110.nii.gz/MD5E-s54007380--4069f2398c006ae649f8218321cd6110.nii.gz

MRN/sub-0027051/ses-1/mri/julichbrain_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MRN/sub-0027051/ses-1/mri/julichbrain_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/zz/MD5E-s225296--ea59c855894be129b30d236594a04109.nii.gz/MD5E-s225296--ea59c855894be129b30d236594a04109.nii.gz

MRN/sub-0027051/ses-1/mri/lpba40_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MRN/sub-0027051/ses-1/mri/lpba40_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/wQ/MD5E-s164002--d1f015b407dfa4e3ba45f8934fa1103b.nii.gz/MD5E-s164002--d1f015b407dfa4e3ba45f8934fa1103b.nii.gz

MRN/sub-0027051/ses-1/mri/m0wp1sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/m0wp2sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/m0wp3sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/mori_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MRN/sub-0027051/ses-1/mri/mori_sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/mwp1sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/mwp2sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/mwp3sub-0027051_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/neuromorphometrics_sub-0027051_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027051/ses-1/mri/neuromorphometrics_sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/p0sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/p1sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/p2sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/p3sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/rp1sub-0027051_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027051/ses-1/mri/rp2sub-0027051_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027051/ses-1/mri/rp3sub-0027051_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027051/ses-1/mri/t_sub-0027051_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027051/ses-1/mri/t_sub-0027051_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027051/ses-1/mri/thalamus_sub-0027051_ses-1_run-1_T1w.csv

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MRN/sub-0027051/ses-1/mri/thalamus_sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/wj_sub-0027051_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027051/ses-1/mri/wmisub-0027051_ses-1_run-1_T1w.nii.gz

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