[DATALAD RUNCMD] Compute NYU_2/sub-0025182/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025182/ses-1/anat/sub-0025182_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025182/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025182/ses-1/label/catROI_sub-0025182_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/44/jz/MD5E-s61337--56036dbb35931bcac16e2f057b5b7a80.mat/MD5E-s61337--56036dbb35931bcac16e2f057b5b7a80.mat

NYU_2/sub-0025182/ses-1/label/catROI_sub-0025182_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Vq/80/MD5E-s188866--6979ca13e81b9aeff48320d28578c5c7.xml/MD5E-s188866--6979ca13e81b9aeff48320d28578c5c7.xml

NYU_2/sub-0025182/ses-1/label/catROI_sub-0025182_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/Q7/MD5E-s57886--56bbdf34adb438e24066f39614f8d545.mat/MD5E-s57886--56bbdf34adb438e24066f39614f8d545.mat

NYU_2/sub-0025182/ses-1/label/catROI_sub-0025182_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/7Q/MD5E-s188857--892e15106fbca6abe4124f247ec1508a.xml/MD5E-s188857--892e15106fbca6abe4124f247ec1508a.xml

NYU_2/sub-0025182/ses-1/label/catROIs_sub-0025182_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jV/9v/MD5E-s120394--f3779e259cc425227e45ca69af272ca3.mat/MD5E-s120394--f3779e259cc425227e45ca69af272ca3.mat

NYU_2/sub-0025182/ses-1/label/catROIs_sub-0025182_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fm/mJ/MD5E-s332241--f080ecc012bc60fe8d8b98f408af9249.xml/MD5E-s332241--f080ecc012bc60fe8d8b98f408af9249.xml

NYU_2/sub-0025182/ses-1/label/catROIs_sub-0025182_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/0Q/MD5E-s120400--e9a2df786c27fa957f5e70cf50fa7b2d.mat/MD5E-s120400--e9a2df786c27fa957f5e70cf50fa7b2d.mat

NYU_2/sub-0025182/ses-1/label/catROIs_sub-0025182_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g3/Wv/MD5E-s332166--e13daae35d5d3fec3cffd9111c3188e9.xml/MD5E-s332166--e13daae35d5d3fec3cffd9111c3188e9.xml

NYU_2/sub-0025182/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1F/mk/MD5E-s145191--f92919665ce8101866780bc6005c390f.nii.gz/MD5E-s145191--f92919665ce8101866780bc6005c390f.nii.gz

NYU_2/sub-0025182/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025182/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/39/vP/MD5E-s162058--d8de14f6a7e9240f899684fac6a76714.nii.gz/MD5E-s162058--d8de14f6a7e9240f899684fac6a76714.nii.gz

NYU_2/sub-0025182/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/w8/MD5E-s162578--4b0a902a5364c35e8aa8bf2ec31f7d7a.nii.gz/MD5E-s162578--4b0a902a5364c35e8aa8bf2ec31f7d7a.nii.gz

NYU_2/sub-0025182/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6J/W1/MD5E-s217993--7e8f89ebb3db45ad3074093ef53edc59.nii.gz/MD5E-s217993--7e8f89ebb3db45ad3074093ef53edc59.nii.gz

NYU_2/sub-0025182/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025182/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/X7/MD5E-s242263--099c77abd02b8e717e3197f36fdddd26.nii.gz/MD5E-s242263--099c77abd02b8e717e3197f36fdddd26.nii.gz

NYU_2/sub-0025182/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V1/x2/MD5E-s19798--1faf8e207e25a0516541af51f7cc19db.nii.gz/MD5E-s19798--1faf8e207e25a0516541af51f7cc19db.nii.gz

NYU_2/sub-0025182/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/jZ/MD5E-s19977--b67a2d82a5ecd47760ca44dac8dfa4b9.nii.gz/MD5E-s19977--b67a2d82a5ecd47760ca44dac8dfa4b9.nii.gz

NYU_2/sub-0025182/ses-1/mri/aal3_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3P/PV/MD5E-s165029--7e22b8f9c938f1b422c69ef015cd9e00.nii.gz/MD5E-s165029--7e22b8f9c938f1b422c69ef015cd9e00.nii.gz

NYU_2/sub-0025182/ses-1/mri/aal3_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/Jq/MD5E-s165779--4e437a9cb379fbdeb0d93bfb9612d6ec.nii.gz/MD5E-s165779--4e437a9cb379fbdeb0d93bfb9612d6ec.nii.gz

NYU_2/sub-0025182/ses-1/mri/anatomy3_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/anatomy3_sub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/WJ/MD5E-s118989--2b3fd54d9236d467cc162da69ac9651e.nii.gz/MD5E-s118989--2b3fd54d9236d467cc162da69ac9651e.nii.gz

NYU_2/sub-0025182/ses-1/mri/anon_misub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/anon_misub-0025182_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025182/ses-1/mri/anon_msub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/anon_msub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/cat_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/M0/qm/MD5E-s86366--f3d244975be26f279c17a8809cc2b34c.nii.gz/MD5E-s86366--f3d244975be26f279c17a8809cc2b34c.nii.gz

NYU_2/sub-0025182/ses-1/mri/cat_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/cobra_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/cobra_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/hammers_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/hammers_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/ibsr_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/ibsr_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/it_sub-0025182_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q9/6m/MD5E-s283--d616d1a0404ea54a66526c6f01040345.mat/MD5E-s283--d616d1a0404ea54a66526c6f01040345.mat

NYU_2/sub-0025182/ses-1/mri/it_sub-0025182_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/it_sub-0025182_ses-1_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025182/ses-1/mri/it_sub-0025182_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025182/ses-1/mri/iy_sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/iy_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/julichbrain_sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/julichbrain_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/lpba40_sub-0025182_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025182/ses-1/mri/lpba40_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/m0wp1sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/m0wp1sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/m0wp2sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/m0wp2sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/m0wp3sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/m0wp3sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/mori_sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/mori_sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/mwp1sub-0025182_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/mwp1sub-0025182_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025182/ses-1/mri/mwp2sub-0025182_ses-1_run-1_T1w.nii.gz

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