[DATALAD RUNCMD] Compute XHCUMS/sub-0025991/ses-4

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025991/ses-4/anat/sub-0025991_ses-4_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025991/ses-4"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025991/ses-4/label/catROI_sub-0025991_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/51/MD5E-s61313--a3d8b3585c1b063e5bdb46a2d0bc91f0.mat/MD5E-s61313--a3d8b3585c1b063e5bdb46a2d0bc91f0.mat

XHCUMS/sub-0025991/ses-4/label/catROI_sub-0025991_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/K9/MD5E-s189125--f9a176dec848227e03436618dbd12ae8.xml/MD5E-s189125--f9a176dec848227e03436618dbd12ae8.xml

XHCUMS/sub-0025991/ses-4/label/catROIs_sub-0025991_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/36/MD5E-s120106--19b17ca8f0c509eef668942779c054da.mat/MD5E-s120106--19b17ca8f0c509eef668942779c054da.mat

XHCUMS/sub-0025991/ses-4/label/catROIs_sub-0025991_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/z9/MD5E-s332209--75d8facc3ca47fdf5315442b1d876d19.xml/MD5E-s332209--75d8facc3ca47fdf5315442b1d876d19.xml

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/P8/MD5E-s158968--4c9e585c405a452ce85340d8ed541c3e.nii.gz/MD5E-s158968--4c9e585c405a452ce85340d8ed541c3e.nii.gz

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/mM/MD5E-s177050--eddc5f9f359f40a50175f1c177762407.nii.gz/MD5E-s177050--eddc5f9f359f40a50175f1c177762407.nii.gz

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/86/MD5E-s241174--f0d297dcd99c047a37c7268f430a9654.nii.gz/MD5E-s241174--f0d297dcd99c047a37c7268f430a9654.nii.gz

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0025991/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/jj/MD5E-s266911--bff2263360d34b805dfd840d90b5eb3c.nii.gz/MD5E-s266911--bff2263360d34b805dfd840d90b5eb3c.nii.gz

XHCUMS/sub-0025991/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025991/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/Xk/MD5E-s24050--1c463967d7a95c2ceb7ffed6881c33c2.nii.gz/MD5E-s24050--1c463967d7a95c2ceb7ffed6881c33c2.nii.gz

XHCUMS/sub-0025991/ses-4/mri/aal3_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025991/ses-4/mri/aal3_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/63/MD5E-s176748--1d465a32b6d1cd4dda96569477a2ac8b.nii.gz/MD5E-s176748--1d465a32b6d1cd4dda96569477a2ac8b.nii.gz

XHCUMS/sub-0025991/ses-4/mri/anatomy3_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025991/ses-4/mri/anatomy3_sub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/Xw/MD5E-s131174--12b36e3d358e22b01992916ba48f5762.nii.gz/MD5E-s131174--12b36e3d358e22b01992916ba48f5762.nii.gz

XHCUMS/sub-0025991/ses-4/mri/anon_misub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/Wg/MD5E-s8430571--f286c1e73bee729bbbcb71161b707289.nii.gz/MD5E-s8430571--f286c1e73bee729bbbcb71161b707289.nii.gz

XHCUMS/sub-0025991/ses-4/mri/anon_msub-0025991_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/vP/MD5E-s8012749--c880fd5f2b98dc843b899db7775564eb.nii.gz/MD5E-s8012749--c880fd5f2b98dc843b899db7775564eb.nii.gz

XHCUMS/sub-0025991/ses-4/mri/cat_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/cobra_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0025991/ses-4/mri/cobra_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/hammers_sub-0025991_ses-4_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

XHCUMS/sub-0025991/ses-4/mri/hammers_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/ibsr_sub-0025991_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

XHCUMS/sub-0025991/ses-4/mri/ibsr_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/it_sub-0025991_ses-4_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/1q/MD5E-s283--dd86c87c0de6041a5185e7b239c9c96a.mat/MD5E-s283--dd86c87c0de6041a5185e7b239c9c96a.mat

XHCUMS/sub-0025991/ses-4/mri/it_sub-0025991_ses-4_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/8X/q7/MD5E-s283--a208d84a9cc50a80d07e0bf93a0250aa.mat/MD5E-s283--a208d84a9cc50a80d07e0bf93a0250aa.mat

XHCUMS/sub-0025991/ses-4/mri/iy_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/julichbrain_sub-0025991_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025991/ses-4/mri/julichbrain_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/lpba40_sub-0025991_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025991/ses-4/mri/lpba40_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/m0wp1sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/m0wp2sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/m0wp3sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/mori_sub-0025991_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025991/ses-4/mri/mori_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/mwp1sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/mwp2sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/mwp3sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/neuromorphometrics_sub-0025991_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025991/ses-4/mri/neuromorphometrics_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/p0sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/p1sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/p2sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/p3sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/rp1sub-0025991_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/rp2sub-0025991_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/rp3sub-0025991_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/t_sub-0025991_ses-4_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025991/ses-4/mri/t_sub-0025991_ses-4_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025991/ses-4/mri/thalamus_sub-0025991_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025991/ses-4/mri/thalamus_sub-0025991_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025991/ses-4/mri/wj_sub-0025991_ses-4_run-1_T1w.nii.gz

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