[DATALAD RUNCMD] Compute SWU_4/sub-0025817/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025817/ses-2/anat/sub-0025817_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025817/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025817/ses-2/label/catROI_sub-0025817_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/K1/MD5E-s61251--5c0fbffe18344b7bdc55a4f4f62055aa.mat/MD5E-s61251--5c0fbffe18344b7bdc55a4f4f62055aa.mat

SWU_4/sub-0025817/ses-2/label/catROI_sub-0025817_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/gQ/MD5E-s188881--7a06594bc755810399c3704523044ae3.xml/MD5E-s188881--7a06594bc755810399c3704523044ae3.xml

SWU_4/sub-0025817/ses-2/label/catROIs_sub-0025817_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/Gp/MD5E-s120087--617f3d9c5d610b1ab86e51f0933b482e.mat/MD5E-s120087--617f3d9c5d610b1ab86e51f0933b482e.mat

SWU_4/sub-0025817/ses-2/label/catROIs_sub-0025817_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/5X/MD5E-s332146--391d2a6d5d385a5922392427992232c9.xml/MD5E-s332146--391d2a6d5d385a5922392427992232c9.xml

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/MX/MD5E-s164733--7192772f6430e1245c5bbf5dc265663d.nii.gz/MD5E-s164733--7192772f6430e1245c5bbf5dc265663d.nii.gz

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/1Z/MD5E-s183616--d8221325aa0032c7b819dfec7f6f12d0.nii.gz/MD5E-s183616--d8221325aa0032c7b819dfec7f6f12d0.nii.gz

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/PP/MD5E-s248432--60368178f7fcd895762b6cb8f76fa861.nii.gz/MD5E-s248432--60368178f7fcd895762b6cb8f76fa861.nii.gz

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025817/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/4v/MD5E-s275471--dbbdba62b5e45d55a5109b6b545378c8.nii.gz/MD5E-s275471--dbbdba62b5e45d55a5109b6b545378c8.nii.gz

SWU_4/sub-0025817/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025817/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/89/MD5E-s25322--6274ad2ffc136d87a74419501c091882.nii.gz/MD5E-s25322--6274ad2ffc136d87a74419501c091882.nii.gz

SWU_4/sub-0025817/ses-2/mri/aal3_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025817/ses-2/mri/aal3_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/Q3/MD5E-s186643--e45ce6a54130e0c5b28aa03748e8fc4a.nii.gz/MD5E-s186643--e45ce6a54130e0c5b28aa03748e8fc4a.nii.gz

SWU_4/sub-0025817/ses-2/mri/anatomy3_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025817/ses-2/mri/anatomy3_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/Ff/MD5E-s134154--b96c5db0eb420a869a275d0bba3bc577.nii.gz/MD5E-s134154--b96c5db0eb420a869a275d0bba3bc577.nii.gz

SWU_4/sub-0025817/ses-2/mri/anon_misub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/Q1/MD5E-s9425237--a1a96d02ffd3bec5c071093dd19c1fdd.nii.gz/MD5E-s9425237--a1a96d02ffd3bec5c071093dd19c1fdd.nii.gz

SWU_4/sub-0025817/ses-2/mri/anon_msub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/M6/MD5E-s10515428--8605a0eaa06c7e0b6e729906c2df6331.nii.gz/MD5E-s10515428--8605a0eaa06c7e0b6e729906c2df6331.nii.gz

SWU_4/sub-0025817/ses-2/mri/cat_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/kQ/MD5E-s100808--e075d0050ee5067de16e9fd5b707c4c0.nii.gz/MD5E-s100808--e075d0050ee5067de16e9fd5b707c4c0.nii.gz

SWU_4/sub-0025817/ses-2/mri/cobra_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025817/ses-2/mri/cobra_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/8f/MD5E-s46526--49397718878556dbc9a7eeb9a89ca400.nii.gz/MD5E-s46526--49397718878556dbc9a7eeb9a89ca400.nii.gz

SWU_4/sub-0025817/ses-2/mri/hammers_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025817/ses-2/mri/hammers_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/3F/MD5E-s145554--68969e6de894cff223b252073fb44fe4.nii.gz/MD5E-s145554--68969e6de894cff223b252073fb44fe4.nii.gz

SWU_4/sub-0025817/ses-2/mri/ibsr_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025817/ses-2/mri/ibsr_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/g9/MD5E-s154888--c6b75991b76d4083a1a2a6b4f6846624.nii.gz/MD5E-s154888--c6b75991b76d4083a1a2a6b4f6846624.nii.gz

SWU_4/sub-0025817/ses-2/mri/it_sub-0025817_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/7z/MD5E-s282--4b1608921185a64f8d1f1c6301246f30.mat/MD5E-s282--4b1608921185a64f8d1f1c6301246f30.mat

SWU_4/sub-0025817/ses-2/mri/it_sub-0025817_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/W3/MD5E-s283--b36579e034b695c808bc9eae99b14573.mat/MD5E-s283--b36579e034b695c808bc9eae99b14573.mat

SWU_4/sub-0025817/ses-2/mri/iy_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/f3/MD5E-s47711572--a3e19a8c214f69b596bcd4c74f23b54a.nii.gz/MD5E-s47711572--a3e19a8c214f69b596bcd4c74f23b54a.nii.gz

SWU_4/sub-0025817/ses-2/mri/julichbrain_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025817/ses-2/mri/julichbrain_sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/lpba40_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025817/ses-2/mri/lpba40_sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/m0wp1sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/Gg/MD5E-s2571812--56427a9c5abfa937aefc339537eaacd6.nii.gz/MD5E-s2571812--56427a9c5abfa937aefc339537eaacd6.nii.gz

SWU_4/sub-0025817/ses-2/mri/m0wp2sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/Kj/MD5E-s2318294--3b005fe25edaa07106da20cfc4eed1ea.nii.gz/MD5E-s2318294--3b005fe25edaa07106da20cfc4eed1ea.nii.gz

SWU_4/sub-0025817/ses-2/mri/m0wp3sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/Jx/MD5E-s2605274--97d257427806a0b7ac6269497a3e3ada.nii.gz/MD5E-s2605274--97d257427806a0b7ac6269497a3e3ada.nii.gz

SWU_4/sub-0025817/ses-2/mri/mori_sub-0025817_ses-2_run-1_T1w.csv

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SWU_4/sub-0025817/ses-2/mri/mori_sub-0025817_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/JZ/88/MD5E-s171854--060ff8cbf195bb5e7c3c301f22657e66.nii.gz/MD5E-s171854--060ff8cbf195bb5e7c3c301f22657e66.nii.gz

SWU_4/sub-0025817/ses-2/mri/mwp1sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/mwp2sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025817/ses-2/mri/mwp3sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/neuromorphometrics_sub-0025817_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025817/ses-2/mri/neuromorphometrics_sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/p0sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/Qm/MD5E-s648588--f940c566548244f54de95336c7b08547.nii.gz/MD5E-s648588--f940c566548244f54de95336c7b08547.nii.gz

SWU_4/sub-0025817/ses-2/mri/p1sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/p2sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/p3sub-0025817_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025817/ses-2/mri/rp1sub-0025817_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025817/ses-2/mri/rp2sub-0025817_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025817/ses-2/mri/rp3sub-0025817_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025817/ses-2/mri/t_sub-0025817_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025817/ses-2/mri/t_sub-0025817_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025817/ses-2/mri/thalamus_sub-0025817_ses-2_run-1_T1w.csv

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SWU_4/sub-0025817/ses-2/mri/thalamus_sub-0025817_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025817/ses-2/mri/wj_sub-0025817_ses-2_run-1_T1w.nii.gz

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