[DATALAD RUNCMD] Compute XHCUMS/sub-0025986/ses-4

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025986/ses-4/anat/sub-0025986_ses-4_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025986/ses-4"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025986/ses-4/label/catROI_sub-0025986_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/Kq/MD5E-s61195--d9e0cbcb9ea4710061f15f89f37ab386.mat/MD5E-s61195--d9e0cbcb9ea4710061f15f89f37ab386.mat

XHCUMS/sub-0025986/ses-4/label/catROI_sub-0025986_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/z7/MD5E-s189154--ca7e1e0a02d0dcc89dd69fcaf04a23f0.xml/MD5E-s189154--ca7e1e0a02d0dcc89dd69fcaf04a23f0.xml

XHCUMS/sub-0025986/ses-4/label/catROIs_sub-0025986_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/3V/MD5E-s120095--c827e7792bdba051e9ce1f50e1ed249d.mat/MD5E-s120095--c827e7792bdba051e9ce1f50e1ed249d.mat

XHCUMS/sub-0025986/ses-4/label/catROIs_sub-0025986_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/6M/MD5E-s332122--1f0f876a0ce4570c8d038153162feae3.xml/MD5E-s332122--1f0f876a0ce4570c8d038153162feae3.xml

XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/Pw/MD5E-s222378--6ce5e61afc1b124de3be93d6dc46e893.nii.gz/MD5E-s222378--6ce5e61afc1b124de3be93d6dc46e893.nii.gz

XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025986/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025986_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0025986/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/aal3_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/aal3_sub-0025986_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0025986/ses-4/mri/anatomy3_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/anatomy3_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/anon_misub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/anon_msub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/cat_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/cobra_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/cobra_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/hammers_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/hammers_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/ibsr_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/ibsr_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/it_sub-0025986_ses-4_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025986/ses-4/mri/it_sub-0025986_ses-4_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025986/ses-4/mri/iy_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/julichbrain_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/julichbrain_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/lpba40_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/lpba40_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/m0wp1sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/m0wp2sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/m0wp3sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/mori_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/mori_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/mwp1sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/mwp2sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/mwp3sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/neuromorphometrics_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/neuromorphometrics_sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/p0sub-0025986_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/rp1sub-0025986_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025986/ses-4/mri/t_sub-0025986_ses-4_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025986/ses-4/mri/t_sub-0025986_ses-4_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025986/ses-4/mri/thalamus_sub-0025986_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025986/ses-4/mri/thalamus_sub-0025986_ses-4_run-1_T1w.nii.gz

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