[DATALAD RUNCMD] Compute SWU_4/sub-0025792/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025792/ses-1/anat/sub-0025792_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025792/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025792/ses-1/label/catROI_sub-0025792_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/2F/MD5E-s57888--ee5ff3fa264cfd782c6d12d28ac4c754.mat/MD5E-s57888--ee5ff3fa264cfd782c6d12d28ac4c754.mat

SWU_4/sub-0025792/ses-1/label/catROI_sub-0025792_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/wj/MD5E-s189142--db97d4571c0ad4e4800d14b8a9695076.xml/MD5E-s189142--db97d4571c0ad4e4800d14b8a9695076.xml

SWU_4/sub-0025792/ses-1/label/catROIs_sub-0025792_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gf/q7/MD5E-s120136--2dced30716b30561481be1804c7d6e85.mat/MD5E-s120136--2dced30716b30561481be1804c7d6e85.mat

SWU_4/sub-0025792/ses-1/label/catROIs_sub-0025792_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/Qq/MD5E-s332135--344baf733dcfbce29a9e42569e5a28cf.xml/MD5E-s332135--344baf733dcfbce29a9e42569e5a28cf.xml

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kK/FQ/MD5E-s159208--c6547251659f37f38fc20e1b9626f5ff.nii.gz/MD5E-s159208--c6547251659f37f38fc20e1b9626f5ff.nii.gz

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/P6/MD5E-s177383--2e040cb367a95b739b3fca8e39ebb70c.nii.gz/MD5E-s177383--2e040cb367a95b739b3fca8e39ebb70c.nii.gz

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/92/MD5E-s240109--bd5b4fa67b82ceb4f813684a7cdd8659.nii.gz/MD5E-s240109--bd5b4fa67b82ceb4f813684a7cdd8659.nii.gz

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025792/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/0G/MD5E-s266602--baec03fe04d03ab939f823ae454212bb.nii.gz/MD5E-s266602--baec03fe04d03ab939f823ae454212bb.nii.gz

SWU_4/sub-0025792/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025792/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/X1/MD5E-s23555--b6c1cc070e025d2a0fa4579762c94d7b.nii.gz/MD5E-s23555--b6c1cc070e025d2a0fa4579762c94d7b.nii.gz

SWU_4/sub-0025792/ses-1/mri/aal3_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025792/ses-1/mri/aal3_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/29/MD5E-s177950--496c9b3103fb62ab783dc2100d24aa22.nii.gz/MD5E-s177950--496c9b3103fb62ab783dc2100d24aa22.nii.gz

SWU_4/sub-0025792/ses-1/mri/anatomy3_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025792/ses-1/mri/anatomy3_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qp/3z/MD5E-s129695--fdf776cb442b4c37add47896488c59ff.nii.gz/MD5E-s129695--fdf776cb442b4c37add47896488c59ff.nii.gz

SWU_4/sub-0025792/ses-1/mri/anon_misub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/ZG/MD5E-s10134879--a4de831c7a2f702f433127e1e86e3281.nii.gz/MD5E-s10134879--a4de831c7a2f702f433127e1e86e3281.nii.gz

SWU_4/sub-0025792/ses-1/mri/anon_msub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VV/kG/MD5E-s9667975--22f473c7d663da90f16c43f4dcd694d2.nii.gz/MD5E-s9667975--22f473c7d663da90f16c43f4dcd694d2.nii.gz

SWU_4/sub-0025792/ses-1/mri/cat_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/qg/MD5E-s98206--2df09a22b417adf5fdc46a37d5143df7.nii.gz/MD5E-s98206--2df09a22b417adf5fdc46a37d5143df7.nii.gz

SWU_4/sub-0025792/ses-1/mri/cobra_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025792/ses-1/mri/cobra_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/q2/MD5E-s46725--716f1581f2067d6c587a2e6ba271df88.nii.gz/MD5E-s46725--716f1581f2067d6c587a2e6ba271df88.nii.gz

SWU_4/sub-0025792/ses-1/mri/hammers_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025792/ses-1/mri/hammers_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/3j/MD5E-s141421--45098f1a1599fb8cdd4f6a5296ce0d3d.nii.gz/MD5E-s141421--45098f1a1599fb8cdd4f6a5296ce0d3d.nii.gz

SWU_4/sub-0025792/ses-1/mri/ibsr_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025792/ses-1/mri/ibsr_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/1P/MD5E-s149644--982dc91f0640c8284268da89c868140c.nii.gz/MD5E-s149644--982dc91f0640c8284268da89c868140c.nii.gz

SWU_4/sub-0025792/ses-1/mri/it_sub-0025792_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/xk/MD5E-s284--d117365613311eca2a471384cd191af6.mat/MD5E-s284--d117365613311eca2a471384cd191af6.mat

SWU_4/sub-0025792/ses-1/mri/it_sub-0025792_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/Zf/MD5E-s282--54cedd5d5beb8d4cc4c165eb2e448199.mat/MD5E-s282--54cedd5d5beb8d4cc4c165eb2e448199.mat

SWU_4/sub-0025792/ses-1/mri/iy_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/j1/MD5E-s42991275--aad6d79d5875a17c9e3bea24a8600bc4.nii.gz/MD5E-s42991275--aad6d79d5875a17c9e3bea24a8600bc4.nii.gz

SWU_4/sub-0025792/ses-1/mri/julichbrain_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025792/ses-1/mri/julichbrain_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/75/MD5E-s189407--f5c818014842259391410efb81af6507.nii.gz/MD5E-s189407--f5c818014842259391410efb81af6507.nii.gz

SWU_4/sub-0025792/ses-1/mri/lpba40_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025792/ses-1/mri/lpba40_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/gG/MD5E-s138054--e328cd94cf709e66546ab2626bc3bf93.nii.gz/MD5E-s138054--e328cd94cf709e66546ab2626bc3bf93.nii.gz

SWU_4/sub-0025792/ses-1/mri/m0wp1sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/92/Fj/MD5E-s2582930--45134b5d40d27a5b339a50bfcfbfb170.nii.gz/MD5E-s2582930--45134b5d40d27a5b339a50bfcfbfb170.nii.gz

SWU_4/sub-0025792/ses-1/mri/m0wp2sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/M0/MD5E-s2338118--52d6378c39f686e2c330540ef1065ac9.nii.gz/MD5E-s2338118--52d6378c39f686e2c330540ef1065ac9.nii.gz

SWU_4/sub-0025792/ses-1/mri/m0wp3sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/91/MD5E-s2478776--94071fa320c7fdf2b4bc005213d59315.nii.gz/MD5E-s2478776--94071fa320c7fdf2b4bc005213d59315.nii.gz

SWU_4/sub-0025792/ses-1/mri/mori_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025792/ses-1/mri/mori_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/k5/MD5E-s165758--65b0f597db0572eee697703c8a647e88.nii.gz/MD5E-s165758--65b0f597db0572eee697703c8a647e88.nii.gz

SWU_4/sub-0025792/ses-1/mri/mwp1sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/pv/MD5E-s2591010--527fb01feb5404603f52e7433c3ced3d.nii.gz/MD5E-s2591010--527fb01feb5404603f52e7433c3ced3d.nii.gz

SWU_4/sub-0025792/ses-1/mri/mwp2sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/Qw/MD5E-s2337936--5bd516d65caa1e9cbbf762c9705e41db.nii.gz/MD5E-s2337936--5bd516d65caa1e9cbbf762c9705e41db.nii.gz

SWU_4/sub-0025792/ses-1/mri/mwp3sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/z7/MD5E-s2475565--9fd43fcb8eb7de610d8e954d8145d37a.nii.gz/MD5E-s2475565--9fd43fcb8eb7de610d8e954d8145d37a.nii.gz

SWU_4/sub-0025792/ses-1/mri/neuromorphometrics_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025792/ses-1/mri/neuromorphometrics_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/JZ/MD5E-s191446--85f8df5e44dfd3f35427abc708c95991.nii.gz/MD5E-s191446--85f8df5e44dfd3f35427abc708c95991.nii.gz

SWU_4/sub-0025792/ses-1/mri/p0sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/4f/MD5E-s621184--c4c8512cc1fdaf6f3e58fd2f92ac8d95.nii.gz/MD5E-s621184--c4c8512cc1fdaf6f3e58fd2f92ac8d95.nii.gz

SWU_4/sub-0025792/ses-1/mri/p1sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/kf/MD5E-s664535--c38bf084cca132d0e8d966c105d80cdc.nii.gz/MD5E-s664535--c38bf084cca132d0e8d966c105d80cdc.nii.gz

SWU_4/sub-0025792/ses-1/mri/p2sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/PW/MD5E-s457708--aef6b8f3b6ea3e880f1ad593d53599a0.nii.gz/MD5E-s457708--aef6b8f3b6ea3e880f1ad593d53599a0.nii.gz

SWU_4/sub-0025792/ses-1/mri/p3sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/13/MD5E-s355386--8d206d155ff947e916fd4dd107ea1ee7.nii.gz/MD5E-s355386--8d206d155ff947e916fd4dd107ea1ee7.nii.gz

SWU_4/sub-0025792/ses-1/mri/rp1sub-0025792_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/2J/MD5E-s454188--1ec1670cfd19c63d39d687f355b53f81.nii.gz/MD5E-s454188--1ec1670cfd19c63d39d687f355b53f81.nii.gz

SWU_4/sub-0025792/ses-1/mri/rp2sub-0025792_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/7P/MD5E-s324843--cd5a59aa90f2221e158375cecae75a93.nii.gz/MD5E-s324843--cd5a59aa90f2221e158375cecae75a93.nii.gz

SWU_4/sub-0025792/ses-1/mri/rp3sub-0025792_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/x9/MD5E-s275408--68814675cdaea4867c50193df0c58b88.nii.gz/MD5E-s275408--68814675cdaea4867c50193df0c58b88.nii.gz

SWU_4/sub-0025792/ses-1/mri/t_sub-0025792_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/vQ/MD5E-s283--dcd7771694852a9f4942e4fed077f8f4.mat/MD5E-s283--dcd7771694852a9f4942e4fed077f8f4.mat

SWU_4/sub-0025792/ses-1/mri/t_sub-0025792_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/38/MD5E-s284--eb0190ba86bda8cc81da9e1161b192cc.mat/MD5E-s284--eb0190ba86bda8cc81da9e1161b192cc.mat

SWU_4/sub-0025792/ses-1/mri/thalamus_sub-0025792_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025792/ses-1/mri/thalamus_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/6q/MD5E-s15972--910a00f356a6a66a5e163de628a02ebc.nii.gz/MD5E-s15972--910a00f356a6a66a5e163de628a02ebc.nii.gz

SWU_4/sub-0025792/ses-1/mri/wj_sub-0025792_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025792/ses-1/mri/wmisub-0025792_ses-1_run-1_T1w.nii.gz

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