[DATALAD RUNCMD] Compute BNU_1/sub-0025896/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025896/ses-2/anat/sub-0025896_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025896/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025896/ses-2/label/catROI_sub-0025896_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/mm/MD5E-s61329--0d439c97f082e2334d1a516d1fa288b5.mat/MD5E-s61329--0d439c97f082e2334d1a516d1fa288b5.mat

BNU_1/sub-0025896/ses-2/label/catROI_sub-0025896_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/kX/MD5E-s188980--4e6c4beb5b90531395c776691c6ce473.xml/MD5E-s188980--4e6c4beb5b90531395c776691c6ce473.xml

BNU_1/sub-0025896/ses-2/label/catROIs_sub-0025896_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/qQ/MD5E-s120092--951163e685575f38dfe924856a2acb7e.mat/MD5E-s120092--951163e685575f38dfe924856a2acb7e.mat

BNU_1/sub-0025896/ses-2/label/catROIs_sub-0025896_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/pz/MD5E-s332152--bc20a340a90c4cf9f947d02ca0ce66a1.xml/MD5E-s332152--bc20a340a90c4cf9f947d02ca0ce66a1.xml

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/q7/MD5E-s143556--859fa09102aebe8032e021b328d320a9.nii.gz/MD5E-s143556--859fa09102aebe8032e021b328d320a9.nii.gz

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/J4/MD5E-s162794--f800c17f8f71b30bb302c41c14695b44.nii.gz/MD5E-s162794--f800c17f8f71b30bb302c41c14695b44.nii.gz

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/6x/MD5E-s218995--1b5f673936dd750567b45caaf3db5bf9.nii.gz/MD5E-s218995--1b5f673936dd750567b45caaf3db5bf9.nii.gz

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025896/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/vV/MD5E-s244404--a1ec012d5c202d5c1ec432cd59819394.nii.gz/MD5E-s244404--a1ec012d5c202d5c1ec432cd59819394.nii.gz

BNU_1/sub-0025896/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025896/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/0G/MD5E-s20396--3962fea51fa4990e20e2e551101a0c72.nii.gz/MD5E-s20396--3962fea51fa4990e20e2e551101a0c72.nii.gz

BNU_1/sub-0025896/ses-2/mri/aal3_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025896/ses-2/mri/aal3_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/xM/MD5E-s163180--4878e09a9f6c14da8d8d9158e4de302a.nii.gz/MD5E-s163180--4878e09a9f6c14da8d8d9158e4de302a.nii.gz

BNU_1/sub-0025896/ses-2/mri/anatomy3_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025896/ses-2/mri/anatomy3_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/x9/MD5E-s117782--17d97fed711a8016d943c8517d43326b.nii.gz/MD5E-s117782--17d97fed711a8016d943c8517d43326b.nii.gz

BNU_1/sub-0025896/ses-2/mri/anon_misub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/1V/MD5E-s3662167--8887c0e271016a72dc63572d96a8733c.nii.gz/MD5E-s3662167--8887c0e271016a72dc63572d96a8733c.nii.gz

BNU_1/sub-0025896/ses-2/mri/anon_msub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1M/3w/MD5E-s10177817--87321732f262ba5abb4c48fada170d3c.nii.gz/MD5E-s10177817--87321732f262ba5abb4c48fada170d3c.nii.gz

BNU_1/sub-0025896/ses-2/mri/cat_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/mw/MD5E-s87880--ca4215f222ec3c07c6e9e71d303891c9.nii.gz/MD5E-s87880--ca4215f222ec3c07c6e9e71d303891c9.nii.gz

BNU_1/sub-0025896/ses-2/mri/cobra_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025896/ses-2/mri/cobra_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/03/MD5E-s40481--f82d7789b2011b9596cd91fa6d285904.nii.gz/MD5E-s40481--f82d7789b2011b9596cd91fa6d285904.nii.gz

BNU_1/sub-0025896/ses-2/mri/hammers_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025896/ses-2/mri/hammers_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/Mk/MD5E-s130873--1b7334fee5de561248b416294c8ee07e.nii.gz/MD5E-s130873--1b7334fee5de561248b416294c8ee07e.nii.gz

BNU_1/sub-0025896/ses-2/mri/ibsr_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025896/ses-2/mri/ibsr_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/Wf/MD5E-s136343--e39ddb6783d8fa1a2ac472a4551e0077.nii.gz/MD5E-s136343--e39ddb6783d8fa1a2ac472a4551e0077.nii.gz

BNU_1/sub-0025896/ses-2/mri/it_sub-0025896_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/wf/MD5E-s282--23dfe71c7bea6a821a41daacb4c1343d.mat/MD5E-s282--23dfe71c7bea6a821a41daacb4c1343d.mat

BNU_1/sub-0025896/ses-2/mri/it_sub-0025896_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/kj/MD5E-s285--97dbdd6ce23ffb12ba28b7d2adc34e99.mat/MD5E-s285--97dbdd6ce23ffb12ba28b7d2adc34e99.mat

BNU_1/sub-0025896/ses-2/mri/iy_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/pq/MD5E-s33621671--611e530388f92d15861c5ee7e10447ff.nii.gz/MD5E-s33621671--611e530388f92d15861c5ee7e10447ff.nii.gz

BNU_1/sub-0025896/ses-2/mri/julichbrain_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025896/ses-2/mri/julichbrain_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/4Q/MD5E-s176103--c9c615738ba5b3caa6755ed9f591dacc.nii.gz/MD5E-s176103--c9c615738ba5b3caa6755ed9f591dacc.nii.gz

BNU_1/sub-0025896/ses-2/mri/lpba40_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025896/ses-2/mri/lpba40_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Gm/MD5E-s126382--be7a9126793d49c17d71f5cddafea5f8.nii.gz/MD5E-s126382--be7a9126793d49c17d71f5cddafea5f8.nii.gz

BNU_1/sub-0025896/ses-2/mri/m0wp1sub-0025896_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/3j/0q/MD5E-s2592617--239c0f4cb6bdcc3927d5211cb3c6d560.nii.gz/MD5E-s2592617--239c0f4cb6bdcc3927d5211cb3c6d560.nii.gz

BNU_1/sub-0025896/ses-2/mri/m0wp2sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/Gq/MD5E-s2282376--d390dfccc0c4c89aaa94a4a94688af42.nii.gz/MD5E-s2282376--d390dfccc0c4c89aaa94a4a94688af42.nii.gz

BNU_1/sub-0025896/ses-2/mri/m0wp3sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/M1/MD5E-s2436445--205af552ba3dc8bbf1401e16f92ceb44.nii.gz/MD5E-s2436445--205af552ba3dc8bbf1401e16f92ceb44.nii.gz

BNU_1/sub-0025896/ses-2/mri/mori_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025896/ses-2/mri/mori_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/J9/MD5E-s149893--274a9d29e0e79ac285fc97680a411a81.nii.gz/MD5E-s149893--274a9d29e0e79ac285fc97680a411a81.nii.gz

BNU_1/sub-0025896/ses-2/mri/mwp1sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/G8/MD5E-s2597396--7e8ca032df6e3302f4c97162bfcefcdf.nii.gz/MD5E-s2597396--7e8ca032df6e3302f4c97162bfcefcdf.nii.gz

BNU_1/sub-0025896/ses-2/mri/mwp2sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025896/ses-2/mri/mwp3sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vJ/WP/MD5E-s2434111--a8f16ef1fd1f8f804ee73c6ed96ba322.nii.gz/MD5E-s2434111--a8f16ef1fd1f8f804ee73c6ed96ba322.nii.gz

BNU_1/sub-0025896/ses-2/mri/neuromorphometrics_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025896/ses-2/mri/neuromorphometrics_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025896/ses-2/mri/p0sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/xZ/MD5E-s738423--3b7c37562c845903a3e7a70b7b1341b0.nii.gz/MD5E-s738423--3b7c37562c845903a3e7a70b7b1341b0.nii.gz

BNU_1/sub-0025896/ses-2/mri/p1sub-0025896_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025896/ses-2/mri/p2sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/p0/MD5E-s517463--8d6e7ffea12ba9ad36543af4001783a8.nii.gz/MD5E-s517463--8d6e7ffea12ba9ad36543af4001783a8.nii.gz

BNU_1/sub-0025896/ses-2/mri/p3sub-0025896_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025896/ses-2/mri/rp1sub-0025896_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025896/ses-2/mri/rp2sub-0025896_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025896/ses-2/mri/rp3sub-0025896_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025896/ses-2/mri/t_sub-0025896_ses-2_run-1_T1w_affine_reorient.mat

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BNU_1/sub-0025896/ses-2/mri/t_sub-0025896_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025896/ses-2/mri/thalamus_sub-0025896_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025896/ses-2/mri/thalamus_sub-0025896_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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