[DATALAD RUNCMD] Compute BNU_2/sub-0025967/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025967/ses-2/anat/sub-0025967_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025967/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025967/ses-2/label/catROI_sub-0025967_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8j/27/MD5E-s57617--6808c63aba4e8df045145969bb250df5.mat/MD5E-s57617--6808c63aba4e8df045145969bb250df5.mat

BNU_2/sub-0025967/ses-2/label/catROI_sub-0025967_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/4v/MD5E-s189026--bc0a7a71d3f6f5fba857930597117f46.xml/MD5E-s189026--bc0a7a71d3f6f5fba857930597117f46.xml

BNU_2/sub-0025967/ses-2/label/catROIs_sub-0025967_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/W5/MD5E-s120118--87f5404e14d58520aa9cd629e61afd9d.mat/MD5E-s120118--87f5404e14d58520aa9cd629e61afd9d.mat

BNU_2/sub-0025967/ses-2/label/catROIs_sub-0025967_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JF/KM/MD5E-s332180--3783d7455eceda43b8f19048d5b27e40.xml/MD5E-s332180--3783d7455eceda43b8f19048d5b27e40.xml

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/JM/MD5E-s154368--0a382d948022143979f308fe6e80e937.nii.gz/MD5E-s154368--0a382d948022143979f308fe6e80e937.nii.gz

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/ZG/MD5E-s174046--325b9a08524f505cf8ab5577cadd647e.nii.gz/MD5E-s174046--325b9a08524f505cf8ab5577cadd647e.nii.gz

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/V4/MD5E-s233799--d3c5dae7218226a3d188d11f29777435.nii.gz/MD5E-s233799--d3c5dae7218226a3d188d11f29777435.nii.gz

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025967/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/MQ/MD5E-s260104--0206a87c289f8fdfa9243458db359c97.nii.gz/MD5E-s260104--0206a87c289f8fdfa9243458db359c97.nii.gz

BNU_2/sub-0025967/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025967/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/jK/MD5E-s23643--d2a75ca488c15393c3f54fa50c785f91.nii.gz/MD5E-s23643--d2a75ca488c15393c3f54fa50c785f91.nii.gz

BNU_2/sub-0025967/ses-2/mri/aal3_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025967/ses-2/mri/aal3_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/w8/MD5E-s176419--91cb900b1c3dae4887c245a6dd98deb8.nii.gz/MD5E-s176419--91cb900b1c3dae4887c245a6dd98deb8.nii.gz

BNU_2/sub-0025967/ses-2/mri/anatomy3_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025967/ses-2/mri/anatomy3_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/6J/MD5E-s127241--21ef4233e93c0b0bd8e574290faa6c92.nii.gz/MD5E-s127241--21ef4233e93c0b0bd8e574290faa6c92.nii.gz

BNU_2/sub-0025967/ses-2/mri/anon_misub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q9/2G/MD5E-s4538698--f8b577ef510f573a4d9bf944baedf3cc.nii.gz/MD5E-s4538698--f8b577ef510f573a4d9bf944baedf3cc.nii.gz

BNU_2/sub-0025967/ses-2/mri/anon_msub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/8g/MD5E-s10578645--dfa5334e1dbf5eebe523084a2040553c.nii.gz/MD5E-s10578645--dfa5334e1dbf5eebe523084a2040553c.nii.gz

BNU_2/sub-0025967/ses-2/mri/cat_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/v3/MD5E-s96973--5ede096403c2cf2869b00a16271aecc3.nii.gz/MD5E-s96973--5ede096403c2cf2869b00a16271aecc3.nii.gz

BNU_2/sub-0025967/ses-2/mri/cobra_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025967/ses-2/mri/cobra_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fg/WP/MD5E-s46662--3a08b40ae2e1df043f8ec9ccb64d76fc.nii.gz/MD5E-s46662--3a08b40ae2e1df043f8ec9ccb64d76fc.nii.gz

BNU_2/sub-0025967/ses-2/mri/hammers_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025967/ses-2/mri/hammers_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/f7/MD5E-s139085--deae9d98aa5b32c3d77a4fdfa1e82b82.nii.gz/MD5E-s139085--deae9d98aa5b32c3d77a4fdfa1e82b82.nii.gz

BNU_2/sub-0025967/ses-2/mri/ibsr_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025967/ses-2/mri/ibsr_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/pG/MD5E-s147503--dad0a07de4d2419c994f48726ff27794.nii.gz/MD5E-s147503--dad0a07de4d2419c994f48726ff27794.nii.gz

BNU_2/sub-0025967/ses-2/mri/it_sub-0025967_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/78/MD5E-s283--71d398d88a43dfdabe411a06104d1033.mat/MD5E-s283--71d398d88a43dfdabe411a06104d1033.mat

BNU_2/sub-0025967/ses-2/mri/it_sub-0025967_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/qJ/MD5E-s284--b24ac4924619f250b151c99ddd806996.mat/MD5E-s284--b24ac4924619f250b151c99ddd806996.mat

BNU_2/sub-0025967/ses-2/mri/iy_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/4p/MD5E-s43682822--1c0e775497332fd3e2310dc20f12e3c3.nii.gz/MD5E-s43682822--1c0e775497332fd3e2310dc20f12e3c3.nii.gz

BNU_2/sub-0025967/ses-2/mri/julichbrain_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025967/ses-2/mri/julichbrain_sub-0025967_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Jv/k3/MD5E-s186706--ecf4e0a509e15747e3143c9dd0825e19.nii.gz/MD5E-s186706--ecf4e0a509e15747e3143c9dd0825e19.nii.gz

BNU_2/sub-0025967/ses-2/mri/lpba40_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025967/ses-2/mri/lpba40_sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/m0wp1sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/44/MD5E-s2579794--40b9b45b4f468293d1194d8198b5037c.nii.gz/MD5E-s2579794--40b9b45b4f468293d1194d8198b5037c.nii.gz

BNU_2/sub-0025967/ses-2/mri/m0wp2sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/jF/MD5E-s2285610--00a4707a4243a8cdb0734561d44625b1.nii.gz/MD5E-s2285610--00a4707a4243a8cdb0734561d44625b1.nii.gz

BNU_2/sub-0025967/ses-2/mri/m0wp3sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025967/ses-2/mri/mori_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025967/ses-2/mri/mori_sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/vm/MD5E-s163986--3ed5c3e0a4d88a2951b5592f2ca2e510.nii.gz/MD5E-s163986--3ed5c3e0a4d88a2951b5592f2ca2e510.nii.gz

BNU_2/sub-0025967/ses-2/mri/mwp1sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/mwp2sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025967/ses-2/mri/mwp3sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/neuromorphometrics_sub-0025967_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025967/ses-2/mri/neuromorphometrics_sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/p0sub-0025967_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025967/ses-2/mri/p1sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/p2sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/p3sub-0025967_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025967/ses-2/mri/rp1sub-0025967_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025967/ses-2/mri/rp2sub-0025967_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025967/ses-2/mri/rp3sub-0025967_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025967/ses-2/mri/t_sub-0025967_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025967/ses-2/mri/t_sub-0025967_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025967/ses-2/mri/thalamus_sub-0025967_ses-2_run-1_T1w.csv

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BNU_2/sub-0025967/ses-2/mri/thalamus_sub-0025967_ses-2_run-1_T1w.nii.gz

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