[DATALAD RUNCMD] Compute Yale/sub-0050574

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050574/anat/sub-0050574_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050574"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050574/label/catROI_sub-0050574_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7G/w6/MD5E-s57892--47e8317a01ddbf62a82c0146256fa5c0.mat/MD5E-s57892--47e8317a01ddbf62a82c0146256fa5c0.mat

Yale/sub-0050574/label/catROI_sub-0050574_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pV/V4/MD5E-s188710--7d2b2c2a33abf28f20ba64f8463037de.xml/MD5E-s188710--7d2b2c2a33abf28f20ba64f8463037de.xml

Yale/sub-0050574/label/catROIs_sub-0050574_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/86/MD5E-s120010--800417a9f75f88f1bcf8546ca3e42be0.mat/MD5E-s120010--800417a9f75f88f1bcf8546ca3e42be0.mat

Yale/sub-0050574/label/catROIs_sub-0050574_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q5/wm/MD5E-s332048--715ca1645619df575a65b352468e6689.xml/MD5E-s332048--715ca1645619df575a65b352468e6689.xml

Yale/sub-0050574/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050574_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050574/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050574_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/4M/MD5E-s177392--b168c177722e17778ca8466061bf4744.nii.gz/MD5E-s177392--b168c177722e17778ca8466061bf4744.nii.gz

Yale/sub-0050574/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050574_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050574/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050574_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050574/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050574_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/25/F8/MD5E-s267407--eb9b8dc15753c0fc554285eb120212b7.nii.gz/MD5E-s267407--eb9b8dc15753c0fc554285eb120212b7.nii.gz

Yale/sub-0050574/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050574_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050574/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050574_T1w.nii.gz

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+../../../.git/annex/objects/8G/Mz/MD5E-s297142--1e1c53fb585c9615f40e25e8227ec331.nii.gz/MD5E-s297142--1e1c53fb585c9615f40e25e8227ec331.nii.gz

Yale/sub-0050574/mri/Tian_Subcortex_S2_7T_sub-0050574_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050574/mri/Tian_Subcortex_S2_7T_sub-0050574_T1w.nii.gz

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+../../../.git/annex/objects/mk/q9/MD5E-s23851--c795706511a5fcf60b5b31fa914264bf.nii.gz/MD5E-s23851--c795706511a5fcf60b5b31fa914264bf.nii.gz

Yale/sub-0050574/mri/aal3_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/aal3_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/anatomy3_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/anatomy3_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/anon_misub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/anon_msub-0050574_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P8/fK/MD5E-s11550032--954e9e5fe19e7d79390018c122bfaaf8.nii.gz/MD5E-s11550032--954e9e5fe19e7d79390018c122bfaaf8.nii.gz

Yale/sub-0050574/mri/cat_sub-0050574_T1w.nii.gz

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+../../../.git/annex/objects/zq/3p/MD5E-s101799--f12a541896e42e36bdbb92c77f9f8b67.nii.gz/MD5E-s101799--f12a541896e42e36bdbb92c77f9f8b67.nii.gz

Yale/sub-0050574/mri/cobra_sub-0050574_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050574/mri/cobra_sub-0050574_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kg/zj/MD5E-s48462--f0057824e7135e0f53b64024305054cd.nii.gz/MD5E-s48462--f0057824e7135e0f53b64024305054cd.nii.gz

Yale/sub-0050574/mri/hammers_sub-0050574_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050574/mri/hammers_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/ibsr_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/ibsr_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/it_sub-0050574_T1w_affine_reorient.mat

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Yale/sub-0050574/mri/it_sub-0050574_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/qW/Zg/MD5E-s283--b80a65b472c980d573946b7b9b707a96.mat/MD5E-s283--b80a65b472c980d573946b7b9b707a96.mat

Yale/sub-0050574/mri/iy_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/julichbrain_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/julichbrain_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/lpba40_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/lpba40_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/m0wp1sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/m0wp2sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/m0wp3sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/mori_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/mori_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/mwp1sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/mwp2sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/mwp3sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/neuromorphometrics_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/neuromorphometrics_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/p0sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/p1sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/p2sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/p3sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/rp1sub-0050574_T1w_affine.nii.gz

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Yale/sub-0050574/mri/rp2sub-0050574_T1w_affine.nii.gz

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Yale/sub-0050574/mri/rp3sub-0050574_T1w_affine.nii.gz

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Yale/sub-0050574/mri/t_sub-0050574_T1w_affine_reorient.mat

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Yale/sub-0050574/mri/t_sub-0050574_T1w_rigid_reorient.mat

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Yale/sub-0050574/mri/thalamus_sub-0050574_T1w.csv

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Yale/sub-0050574/mri/thalamus_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wj_sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wmisub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wmsub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wp0sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wp1sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wp2sub-0050574_T1w.nii.gz

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Yale/sub-0050574/mri/wp3sub-0050574_T1w.nii.gz

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