[DATALAD RUNCMD] Compute UM_1/sub-0050303

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050303/anat/sub-0050303_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050303"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050303/label/catROI_sub-0050303_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/x4/MD5E-s61461--ec3b4c71a9ab5fe2212f5ddffa64717d.mat/MD5E-s61461--ec3b4c71a9ab5fe2212f5ddffa64717d.mat

UM_1/sub-0050303/label/catROI_sub-0050303_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fq/X4/MD5E-s189036--d969abcba875ed5477ff70c0e4708b18.xml/MD5E-s189036--d969abcba875ed5477ff70c0e4708b18.xml

UM_1/sub-0050303/label/catROIs_sub-0050303_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zJ/4p/MD5E-s120501--0ecb1ae7ab34408904473b1fd788af25.mat/MD5E-s120501--0ecb1ae7ab34408904473b1fd788af25.mat

UM_1/sub-0050303/label/catROIs_sub-0050303_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/7J/MD5E-s332106--88c908c0fe9c93e125dfc05569dd5b3a.xml/MD5E-s332106--88c908c0fe9c93e125dfc05569dd5b3a.xml

UM_1/sub-0050303/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050303/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x3/Kj/MD5E-s163054--d3d89dfa3d7025b99432b0d22a2624ea.nii.gz/MD5E-s163054--d3d89dfa3d7025b99432b0d22a2624ea.nii.gz

UM_1/sub-0050303/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050303/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K4/mP/MD5E-s183227--57dca7ad769dcc724ee1613bbff54240.nii.gz/MD5E-s183227--57dca7ad769dcc724ee1613bbff54240.nii.gz

UM_1/sub-0050303/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050303/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z7/X9/MD5E-s231212--f1a2be67467ebd32bfb9ab650a30e5d8.nii.gz/MD5E-s231212--f1a2be67467ebd32bfb9ab650a30e5d8.nii.gz

UM_1/sub-0050303/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050303/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K1/PK/MD5E-s256757--fcd3b34d39e57d0ad3125b8f7f0e2b62.nii.gz/MD5E-s256757--fcd3b34d39e57d0ad3125b8f7f0e2b62.nii.gz

UM_1/sub-0050303/mri/Tian_Subcortex_S2_7T_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050303/mri/Tian_Subcortex_S2_7T_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M4/Vz/MD5E-s20857--2cd76883194369ca1e8c5840797896bb.nii.gz/MD5E-s20857--2cd76883194369ca1e8c5840797896bb.nii.gz

UM_1/sub-0050303/mri/aal3_sub-0050303_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/aal3_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/anatomy3_sub-0050303_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/anatomy3_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wX/5G/MD5E-s131576--ecad74daca901cfb65aa59915dc6f451.nii.gz/MD5E-s131576--ecad74daca901cfb65aa59915dc6f451.nii.gz

UM_1/sub-0050303/mri/anon_misub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/anon_msub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/gk/MD5E-s6924267--e1294eb9f73f94658a13f2e325dfc790.nii.gz/MD5E-s6924267--e1294eb9f73f94658a13f2e325dfc790.nii.gz

UM_1/sub-0050303/mri/cat_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kz/Wv/MD5E-s103658--57c5383d98ed631627247a4bd3cfe879.nii.gz/MD5E-s103658--57c5383d98ed631627247a4bd3cfe879.nii.gz

UM_1/sub-0050303/mri/cobra_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050303/mri/cobra_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/hammers_sub-0050303_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050303/mri/hammers_sub-0050303_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/ibsr_sub-0050303_T1w.csv

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UM_1/sub-0050303/mri/ibsr_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/it_sub-0050303_T1w_affine_reorient.mat

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UM_1/sub-0050303/mri/it_sub-0050303_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/iy_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/julichbrain_sub-0050303_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050303/mri/julichbrain_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/lpba40_sub-0050303_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050303/mri/lpba40_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/m0wp1sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/m0wp2sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/m0wp3sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/mori_sub-0050303_T1w.csv

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UM_1/sub-0050303/mri/mori_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/mwp1sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/mwp2sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/mwp3sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/neuromorphometrics_sub-0050303_T1w.csv

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UM_1/sub-0050303/mri/neuromorphometrics_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/p0sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/p1sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/p2sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/p3sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/rp1sub-0050303_T1w_affine.nii.gz

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UM_1/sub-0050303/mri/rp2sub-0050303_T1w_affine.nii.gz

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UM_1/sub-0050303/mri/rp3sub-0050303_T1w_affine.nii.gz

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UM_1/sub-0050303/mri/t_sub-0050303_T1w_affine_reorient.mat

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UM_1/sub-0050303/mri/t_sub-0050303_T1w_rigid_reorient.mat

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UM_1/sub-0050303/mri/thalamus_sub-0050303_T1w.csv

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UM_1/sub-0050303/mri/thalamus_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wj_sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wmisub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wmsub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wp0sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wp1sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wp2sub-0050303_T1w.nii.gz

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UM_1/sub-0050303/mri/wp3sub-0050303_T1w.nii.gz

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