[DATALAD RUNCMD] Compute Pitt/sub-0050029

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050029/anat/sub-0050029_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050029"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050029/label/catROI_sub-0050029_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xJ/8m/MD5E-s61349--53dabb9a4a0239f6772889b5d292be28.mat/MD5E-s61349--53dabb9a4a0239f6772889b5d292be28.mat

Pitt/sub-0050029/label/catROI_sub-0050029_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q5/mk/MD5E-s188573--b25f8171dca02726158a7358a3c11514.xml/MD5E-s188573--b25f8171dca02726158a7358a3c11514.xml

Pitt/sub-0050029/label/catROIs_sub-0050029_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4z/p4/MD5E-s120238--bd0aaa115f49ff2356ea8446802b9fc1.mat/MD5E-s120238--bd0aaa115f49ff2356ea8446802b9fc1.mat

Pitt/sub-0050029/label/catROIs_sub-0050029_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/07/m5/MD5E-s332071--91508f62bcffc5a211ee2a53cedaeb2e.xml/MD5E-s332071--91508f62bcffc5a211ee2a53cedaeb2e.xml

Pitt/sub-0050029/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050029/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Ff/JF/MD5E-s168218--ff2015fcae25137596aa0590fc446e31.nii.gz/MD5E-s168218--ff2015fcae25137596aa0590fc446e31.nii.gz

Pitt/sub-0050029/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050029/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GJ/fX/MD5E-s188419--6572628109d3b62984ba8e1b9e76ce29.nii.gz/MD5E-s188419--6572628109d3b62984ba8e1b9e76ce29.nii.gz

Pitt/sub-0050029/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050029/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3p/q0/MD5E-s256710--f97a5e333d73ef95ee4ff8eb9ab81735.nii.gz/MD5E-s256710--f97a5e333d73ef95ee4ff8eb9ab81735.nii.gz

Pitt/sub-0050029/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050029/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gK/1G/MD5E-s284418--09e9c6a4e4564f9f3c1d5c04f5704c8c.nii.gz/MD5E-s284418--09e9c6a4e4564f9f3c1d5c04f5704c8c.nii.gz

Pitt/sub-0050029/mri/Tian_Subcortex_S2_7T_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050029/mri/Tian_Subcortex_S2_7T_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X9/3m/MD5E-s24534--722019e3abb61d73c1f00a52e9494d01.nii.gz/MD5E-s24534--722019e3abb61d73c1f00a52e9494d01.nii.gz

Pitt/sub-0050029/mri/aal3_sub-0050029_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050029/mri/aal3_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/anatomy3_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Pitt/sub-0050029/mri/anatomy3_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VM/Z7/MD5E-s138801--6cc5c378211e9d6d6eee1f6035579d87.nii.gz/MD5E-s138801--6cc5c378211e9d6d6eee1f6035579d87.nii.gz

Pitt/sub-0050029/mri/anon_misub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/Xp/MD5E-s4927370--a31daf3b6bab4de08afd70233958db60.nii.gz/MD5E-s4927370--a31daf3b6bab4de08afd70233958db60.nii.gz

Pitt/sub-0050029/mri/anon_msub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pm/QZ/MD5E-s12774593--05bb6a435ceb145aa3837c6834ec48e0.nii.gz/MD5E-s12774593--05bb6a435ceb145aa3837c6834ec48e0.nii.gz

Pitt/sub-0050029/mri/cat_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3v/QQ/MD5E-s98691--9cd847102ab896822b6f59610689330d.nii.gz/MD5E-s98691--9cd847102ab896822b6f59610689330d.nii.gz

Pitt/sub-0050029/mri/cobra_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050029/mri/cobra_sub-0050029_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050029/mri/hammers_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050029/mri/hammers_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/ibsr_sub-0050029_T1w.csv

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Pitt/sub-0050029/mri/ibsr_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/it_sub-0050029_T1w_affine_reorient.mat

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Pitt/sub-0050029/mri/it_sub-0050029_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/1w/Jw/MD5E-s284--ce9e616f9f3fd05794bc93b12c3a441b.mat/MD5E-s284--ce9e616f9f3fd05794bc93b12c3a441b.mat

Pitt/sub-0050029/mri/iy_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/julichbrain_sub-0050029_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050029/mri/julichbrain_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/lpba40_sub-0050029_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050029/mri/lpba40_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/m0wp1sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/m0wp2sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/m0wp3sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/mori_sub-0050029_T1w.csv

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Pitt/sub-0050029/mri/mori_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/mwp1sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/mwp2sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/mwp3sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/neuromorphometrics_sub-0050029_T1w.csv

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Pitt/sub-0050029/mri/neuromorphometrics_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/p0sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/p1sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/p2sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/p3sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/rp1sub-0050029_T1w_affine.nii.gz

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Pitt/sub-0050029/mri/rp2sub-0050029_T1w_affine.nii.gz

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Pitt/sub-0050029/mri/rp3sub-0050029_T1w_affine.nii.gz

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Pitt/sub-0050029/mri/t_sub-0050029_T1w_affine_reorient.mat

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Pitt/sub-0050029/mri/t_sub-0050029_T1w_rigid_reorient.mat

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Pitt/sub-0050029/mri/thalamus_sub-0050029_T1w.csv

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Pitt/sub-0050029/mri/thalamus_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/wj_sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/wmisub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/wmsub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/wp0sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/wp1sub-0050029_T1w.nii.gz

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Pitt/sub-0050029/mri/wp2sub-0050029_T1w.nii.gz

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