[DATALAD RUNCMD] Compute Olin/sub-0050104

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050104/anat/sub-0050104_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050104"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050104/label/catROI_sub-0050104_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0J/2X/MD5E-s61404--bcb7f10f23c14fed8ceed18608e9b32a.mat/MD5E-s61404--bcb7f10f23c14fed8ceed18608e9b32a.mat

Olin/sub-0050104/label/catROI_sub-0050104_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/W0/wG/MD5E-s188593--9ebb87cc7d1961cf59a422fd56f9a3a7.xml/MD5E-s188593--9ebb87cc7d1961cf59a422fd56f9a3a7.xml

Olin/sub-0050104/label/catROIs_sub-0050104_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/vQ/MD5E-s120160--0f1506d723db2212cf5f9a27dc00538d.mat/MD5E-s120160--0f1506d723db2212cf5f9a27dc00538d.mat

Olin/sub-0050104/label/catROIs_sub-0050104_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/vm/MD5E-s332163--8b4e12d02dfbd5db6134a30b915a6485.xml/MD5E-s332163--8b4e12d02dfbd5db6134a30b915a6485.xml

Olin/sub-0050104/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050104/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x4/F3/MD5E-s198155--b444bddc438f9e3eb5d92faeff464fd6.nii.gz/MD5E-s198155--b444bddc438f9e3eb5d92faeff464fd6.nii.gz

Olin/sub-0050104/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050104/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W2/KG/MD5E-s223261--e8d32e38d56ba26025a72266575d57fc.nii.gz/MD5E-s223261--e8d32e38d56ba26025a72266575d57fc.nii.gz

Olin/sub-0050104/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050104/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7J/W5/MD5E-s285281--88dd4becc1543c411e32218280d9dec9.nii.gz/MD5E-s285281--88dd4becc1543c411e32218280d9dec9.nii.gz

Olin/sub-0050104/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050104/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zf/Fv/MD5E-s318622--6d821d097e294e6bd69093acbeb89746.nii.gz/MD5E-s318622--6d821d097e294e6bd69093acbeb89746.nii.gz

Olin/sub-0050104/mri/Tian_Subcortex_S2_7T_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050104/mri/Tian_Subcortex_S2_7T_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/94/2f/MD5E-s25211--ba4431b85e5350e58d2f6e11e16461e7.nii.gz/MD5E-s25211--ba4431b85e5350e58d2f6e11e16461e7.nii.gz

Olin/sub-0050104/mri/aal3_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Olin/sub-0050104/mri/aal3_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050104/mri/anatomy3_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Olin/sub-0050104/mri/anatomy3_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6F/61/MD5E-s161192--797c5c6ca3beeea011c406e05a878d2e.nii.gz/MD5E-s161192--797c5c6ca3beeea011c406e05a878d2e.nii.gz

Olin/sub-0050104/mri/anon_misub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zv/x3/MD5E-s5259672--59d66964c0e32edfce1ba5edb0dc9cf5.nii.gz/MD5E-s5259672--59d66964c0e32edfce1ba5edb0dc9cf5.nii.gz

Olin/sub-0050104/mri/anon_msub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zw/v6/MD5E-s10611011--418c1280d6526429cb81eaafb084310f.nii.gz/MD5E-s10611011--418c1280d6526429cb81eaafb084310f.nii.gz

Olin/sub-0050104/mri/cat_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p9/6V/MD5E-s121625--8feec5068f88919225843e3812c1ef49.nii.gz/MD5E-s121625--8feec5068f88919225843e3812c1ef49.nii.gz

Olin/sub-0050104/mri/cobra_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050104/mri/cobra_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050104/mri/hammers_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050104/mri/hammers_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wK/QQ/MD5E-s171587--de47cf7c38cd0ce57f1dbf51bffce0b8.nii.gz/MD5E-s171587--de47cf7c38cd0ce57f1dbf51bffce0b8.nii.gz

Olin/sub-0050104/mri/ibsr_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050104/mri/ibsr_sub-0050104_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050104/mri/it_sub-0050104_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5f/33/MD5E-s282--184796ebf09400211a61b5c0e02a1571.mat/MD5E-s282--184796ebf09400211a61b5c0e02a1571.mat

Olin/sub-0050104/mri/it_sub-0050104_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zJ/4W/MD5E-s282--84455b4ef2578032bbe079a1d777c177.mat/MD5E-s282--84455b4ef2578032bbe079a1d777c177.mat

Olin/sub-0050104/mri/iy_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/julichbrain_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050104/mri/julichbrain_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/lpba40_sub-0050104_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Olin/sub-0050104/mri/lpba40_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/m0wp1sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/m0wp2sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/m0wp3sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/mori_sub-0050104_T1w.csv

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Olin/sub-0050104/mri/mori_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/mwp1sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/mwp2sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/mwp3sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/neuromorphometrics_sub-0050104_T1w.csv

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Olin/sub-0050104/mri/neuromorphometrics_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/p0sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/p1sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/p2sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/p3sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/rp1sub-0050104_T1w_affine.nii.gz

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Olin/sub-0050104/mri/rp2sub-0050104_T1w_affine.nii.gz

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Olin/sub-0050104/mri/rp3sub-0050104_T1w_affine.nii.gz

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Olin/sub-0050104/mri/t_sub-0050104_T1w_affine_reorient.mat

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Olin/sub-0050104/mri/t_sub-0050104_T1w_rigid_reorient.mat

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Olin/sub-0050104/mri/thalamus_sub-0050104_T1w.csv

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Olin/sub-0050104/mri/thalamus_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/wj_sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/wmisub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/wmsub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/wp0sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/wp1sub-0050104_T1w.nii.gz

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Olin/sub-0050104/mri/wp2sub-0050104_T1w.nii.gz

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