[DATALAD RUNCMD] Compute Leuven_1/sub-0050688

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050688/anat/sub-0050688_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050688"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050688/label/catROI_sub-0050688_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2v/59/MD5E-s61271--8c495b2eb8f198b671944735c2599541.mat/MD5E-s61271--8c495b2eb8f198b671944735c2599541.mat

Leuven_1/sub-0050688/label/catROI_sub-0050688_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wp/9M/MD5E-s188873--3a9db4310f686a1181d2d2b22ecae5a4.xml/MD5E-s188873--3a9db4310f686a1181d2d2b22ecae5a4.xml

Leuven_1/sub-0050688/label/catROIs_sub-0050688_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/6F/MD5E-s120063--cb0398614edb0844ec676edfc723abaf.mat/MD5E-s120063--cb0398614edb0844ec676edfc723abaf.mat

Leuven_1/sub-0050688/label/catROIs_sub-0050688_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/V4/X3/MD5E-s332206--716297b53fdf2f30caa6c048bdc1321f.xml/MD5E-s332206--716297b53fdf2f30caa6c048bdc1321f.xml

Leuven_1/sub-0050688/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050688/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m5/J6/MD5E-s170252--2b9b13b2929755298909eac6619b04a9.nii.gz/MD5E-s170252--2b9b13b2929755298909eac6619b04a9.nii.gz

Leuven_1/sub-0050688/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050688/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fq/PK/MD5E-s189182--e4f969290f7639d35d55ece566466722.nii.gz/MD5E-s189182--e4f969290f7639d35d55ece566466722.nii.gz

Leuven_1/sub-0050688/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050688/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wf/1m/MD5E-s241786--6f47985349dbc54fea1a1d654a33718b.nii.gz/MD5E-s241786--6f47985349dbc54fea1a1d654a33718b.nii.gz

Leuven_1/sub-0050688/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050688/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/8z/MD5E-s268990--4b90fe96b75390fdfeb8c2cec2d8e873.nii.gz/MD5E-s268990--4b90fe96b75390fdfeb8c2cec2d8e873.nii.gz

Leuven_1/sub-0050688/mri/Tian_Subcortex_S2_7T_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050688/mri/Tian_Subcortex_S2_7T_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g5/kF/MD5E-s24788--9d0800ac3d7344bb822a1705a708e9d0.nii.gz/MD5E-s24788--9d0800ac3d7344bb822a1705a708e9d0.nii.gz

Leuven_1/sub-0050688/mri/aal3_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_1/sub-0050688/mri/aal3_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/anatomy3_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_1/sub-0050688/mri/anatomy3_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xp/82/MD5E-s137898--aaec621ea4d71d265e4b5b0c121d1eca.nii.gz/MD5E-s137898--aaec621ea4d71d265e4b5b0c121d1eca.nii.gz

Leuven_1/sub-0050688/mri/anon_misub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fk/5x/MD5E-s6098033--b9d95d435e90bc230901f454d343081a.nii.gz/MD5E-s6098033--b9d95d435e90bc230901f454d343081a.nii.gz

Leuven_1/sub-0050688/mri/anon_msub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XV/Vf/MD5E-s12287671--84ef61f727694985c586e25cfd83ae48.nii.gz/MD5E-s12287671--84ef61f727694985c586e25cfd83ae48.nii.gz

Leuven_1/sub-0050688/mri/cat_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MP/2v/MD5E-s104420--4930c91c2f9ce6e98b83e389d71b411e.nii.gz/MD5E-s104420--4930c91c2f9ce6e98b83e389d71b411e.nii.gz

Leuven_1/sub-0050688/mri/cobra_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050688/mri/cobra_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z1/Xp/MD5E-s50697--20895869f2e3ee35baf927c653c0114a.nii.gz/MD5E-s50697--20895869f2e3ee35baf927c653c0114a.nii.gz

Leuven_1/sub-0050688/mri/hammers_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050688/mri/hammers_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/M0/MD5E-s150224--0b6b8501060ba7fa11ef2bb20a162391.nii.gz/MD5E-s150224--0b6b8501060ba7fa11ef2bb20a162391.nii.gz

Leuven_1/sub-0050688/mri/ibsr_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_1/sub-0050688/mri/ibsr_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JK/jz/MD5E-s155241--c7af81c62976ace7947f5b57576cffd2.nii.gz/MD5E-s155241--c7af81c62976ace7947f5b57576cffd2.nii.gz

Leuven_1/sub-0050688/mri/it_sub-0050688_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pQ/z5/MD5E-s283--ffa0b98de45f95a8719cb274f215b953.mat/MD5E-s283--ffa0b98de45f95a8719cb274f215b953.mat

Leuven_1/sub-0050688/mri/it_sub-0050688_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mK/60/MD5E-s283--3ffba16023d5075142be1e87bb4b99dc.mat/MD5E-s283--3ffba16023d5075142be1e87bb4b99dc.mat

Leuven_1/sub-0050688/mri/iy_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k9/Xf/MD5E-s41575194--9ffc167dd36ffe89ac84a1c48b37caf2.nii.gz/MD5E-s41575194--9ffc167dd36ffe89ac84a1c48b37caf2.nii.gz

Leuven_1/sub-0050688/mri/julichbrain_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050688/mri/julichbrain_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X3/59/MD5E-s202249--067be444d5dbb65cebc69b3f3afd2833.nii.gz/MD5E-s202249--067be444d5dbb65cebc69b3f3afd2833.nii.gz

Leuven_1/sub-0050688/mri/lpba40_sub-0050688_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_1/sub-0050688/mri/lpba40_sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/m0wp1sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/m0wp2sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/m0wp3sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/mori_sub-0050688_T1w.csv

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Leuven_1/sub-0050688/mri/mori_sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/mwp1sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/mwp2sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/mwp3sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/neuromorphometrics_sub-0050688_T1w.csv

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Leuven_1/sub-0050688/mri/neuromorphometrics_sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/p0sub-0050688_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/p1sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/p2sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/p3sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/rp1sub-0050688_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/rp2sub-0050688_T1w_affine.nii.gz

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Leuven_1/sub-0050688/mri/rp3sub-0050688_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050688/mri/t_sub-0050688_T1w_affine_reorient.mat

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Leuven_1/sub-0050688/mri/t_sub-0050688_T1w_rigid_reorient.mat

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Leuven_1/sub-0050688/mri/thalamus_sub-0050688_T1w.csv

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Leuven_1/sub-0050688/mri/thalamus_sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/wj_sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/wmisub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/wmsub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/wp0sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/wp1sub-0050688_T1w.nii.gz

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Leuven_1/sub-0050688/mri/wp2sub-0050688_T1w.nii.gz

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