[DATALAD RUNCMD] Compute Yale/sub-0050615

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050615/anat/sub-0050615_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050615"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050615/label/catROI_sub-0050615_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mq/k9/MD5E-s57598--1605f636ad9af165281eb8f0ab13b052.mat/MD5E-s57598--1605f636ad9af165281eb8f0ab13b052.mat

Yale/sub-0050615/label/catROI_sub-0050615_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fg/V7/MD5E-s188998--2da3cf693d2932dc2aa90199b6b1373b.xml/MD5E-s188998--2da3cf693d2932dc2aa90199b6b1373b.xml

Yale/sub-0050615/label/catROIs_sub-0050615_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/gq/MD5E-s120252--3cd95b33aaea1d26c11531b3cec86d9c.mat/MD5E-s120252--3cd95b33aaea1d26c11531b3cec86d9c.mat

Yale/sub-0050615/label/catROIs_sub-0050615_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/Vk/MD5E-s332154--657981bd45dbc8917bc6279f64c6643e.xml/MD5E-s332154--657981bd45dbc8917bc6279f64c6643e.xml

Yale/sub-0050615/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050615/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JF/jQ/MD5E-s150129--71ec1cd1b5c304e62f17628b64ce2186.nii.gz/MD5E-s150129--71ec1cd1b5c304e62f17628b64ce2186.nii.gz

Yale/sub-0050615/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050615/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kk/6G/MD5E-s171000--8762bda7de90dcef5703f6009fe88109.nii.gz/MD5E-s171000--8762bda7de90dcef5703f6009fe88109.nii.gz

Yale/sub-0050615/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050615/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/11/MD5E-s229829--51dc8c0a4140ddd59826f3d2a6fa8189.nii.gz/MD5E-s229829--51dc8c0a4140ddd59826f3d2a6fa8189.nii.gz

Yale/sub-0050615/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050615/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WM/xX/MD5E-s256454--06cfe79db27f1f18b5fca837466c5bf9.nii.gz/MD5E-s256454--06cfe79db27f1f18b5fca837466c5bf9.nii.gz

Yale/sub-0050615/mri/Tian_Subcortex_S2_7T_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050615/mri/Tian_Subcortex_S2_7T_sub-0050615_T1w.nii.gz

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+../../../.git/annex/objects/9G/4j/MD5E-s22682--c040991eb305b2964087eb2c2c219680.nii.gz/MD5E-s22682--c040991eb305b2964087eb2c2c219680.nii.gz

Yale/sub-0050615/mri/aal3_sub-0050615_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050615/mri/aal3_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/anatomy3_sub-0050615_T1w.csv

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Yale/sub-0050615/mri/anatomy3_sub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zw/wP/MD5E-s123320--cea1437d50dd023a9f8472dceaaf6a9b.nii.gz/MD5E-s123320--cea1437d50dd023a9f8472dceaaf6a9b.nii.gz

Yale/sub-0050615/mri/anon_misub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
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Yale/sub-0050615/mri/anon_msub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3x/0f/MD5E-s10683419--906ef58e0cd5be96e3544b4ad9bea639.nii.gz/MD5E-s10683419--906ef58e0cd5be96e3544b4ad9bea639.nii.gz

Yale/sub-0050615/mri/cat_sub-0050615_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/mx/MD5E-s88348--7fd3220e776ca3e97d299bfbf5c645ff.nii.gz/MD5E-s88348--7fd3220e776ca3e97d299bfbf5c645ff.nii.gz

Yale/sub-0050615/mri/cobra_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050615/mri/cobra_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/hammers_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050615/mri/hammers_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/ibsr_sub-0050615_T1w.csv

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Yale/sub-0050615/mri/ibsr_sub-0050615_T1w.nii.gz

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+../../../.git/annex/objects/28/j6/MD5E-s141952--6050bc6bac0ddf68d7718a5ab5344047.nii.gz/MD5E-s141952--6050bc6bac0ddf68d7718a5ab5344047.nii.gz

Yale/sub-0050615/mri/it_sub-0050615_T1w_affine_reorient.mat

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+../../../.git/annex/objects/0K/zw/MD5E-s284--a39a705029acbe93938af900fe5901b0.mat/MD5E-s284--a39a705029acbe93938af900fe5901b0.mat

Yale/sub-0050615/mri/it_sub-0050615_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/Zz/PX/MD5E-s285--7c693ffa901b14b5fbb84c5c8cf55057.mat/MD5E-s285--7c693ffa901b14b5fbb84c5c8cf55057.mat

Yale/sub-0050615/mri/iy_sub-0050615_T1w.nii.gz

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+../../../.git/annex/objects/wM/PF/MD5E-s39454689--db7495cb9c1aee8c35b91ad1be00f943.nii.gz/MD5E-s39454689--db7495cb9c1aee8c35b91ad1be00f943.nii.gz

Yale/sub-0050615/mri/julichbrain_sub-0050615_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050615/mri/julichbrain_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/lpba40_sub-0050615_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050615/mri/lpba40_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/m0wp1sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/m0wp2sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/m0wp3sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/mori_sub-0050615_T1w.csv

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Yale/sub-0050615/mri/mori_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/mwp1sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/mwp2sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/mwp3sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/neuromorphometrics_sub-0050615_T1w.csv

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Yale/sub-0050615/mri/neuromorphometrics_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/p0sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/p1sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/p2sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/p3sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/rp1sub-0050615_T1w_affine.nii.gz

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Yale/sub-0050615/mri/rp2sub-0050615_T1w_affine.nii.gz

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Yale/sub-0050615/mri/rp3sub-0050615_T1w_affine.nii.gz

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Yale/sub-0050615/mri/t_sub-0050615_T1w_affine_reorient.mat

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Yale/sub-0050615/mri/t_sub-0050615_T1w_rigid_reorient.mat

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Yale/sub-0050615/mri/thalamus_sub-0050615_T1w.csv

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Yale/sub-0050615/mri/thalamus_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/wj_sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/wmisub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/wmsub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/wp0sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/wp1sub-0050615_T1w.nii.gz

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Yale/sub-0050615/mri/wp2sub-0050615_T1w.nii.gz

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