[DATALAD RUNCMD] Compute UM_2/sub-0050387

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050387/anat/sub-0050387_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050387"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050387/label/catROI_sub-0050387_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jW/Xf/MD5E-s61310--d3c2635e316396a55850aaddadfc2c8a.mat/MD5E-s61310--d3c2635e316396a55850aaddadfc2c8a.mat

UM_2/sub-0050387/label/catROI_sub-0050387_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0g/5W/MD5E-s188709--bcfe1bbe5cb83192038166fa312f6ed0.xml/MD5E-s188709--bcfe1bbe5cb83192038166fa312f6ed0.xml

UM_2/sub-0050387/label/catROIs_sub-0050387_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zf/0M/MD5E-s120147--579d88baa1e4bd3de32d3e6a71247a29.mat/MD5E-s120147--579d88baa1e4bd3de32d3e6a71247a29.mat

UM_2/sub-0050387/label/catROIs_sub-0050387_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/M2/w4/MD5E-s332183--a03d7d68f8d0dbecbae1a7788de2f8c6.xml/MD5E-s332183--a03d7d68f8d0dbecbae1a7788de2f8c6.xml

UM_2/sub-0050387/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050387/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GP/kf/MD5E-s160125--d9be0efc831d738bad53894706e2c6fa.nii.gz/MD5E-s160125--d9be0efc831d738bad53894706e2c6fa.nii.gz

UM_2/sub-0050387/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050387/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VG/21/MD5E-s180046--5c168f343ac435333821a41fc977d147.nii.gz/MD5E-s180046--5c168f343ac435333821a41fc977d147.nii.gz

UM_2/sub-0050387/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050387/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MQ/Pw/MD5E-s227045--e66cde7bf314a0f471b9a4931f05ab38.nii.gz/MD5E-s227045--e66cde7bf314a0f471b9a4931f05ab38.nii.gz

UM_2/sub-0050387/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050387/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q6/pq/MD5E-s252929--a93b9b5cbbf3caa32ec797821e7263c0.nii.gz/MD5E-s252929--a93b9b5cbbf3caa32ec797821e7263c0.nii.gz

UM_2/sub-0050387/mri/Tian_Subcortex_S2_7T_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050387/mri/Tian_Subcortex_S2_7T_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FK/mK/MD5E-s19985--1a370ade5af81d058e504ae77635a200.nii.gz/MD5E-s19985--1a370ade5af81d058e504ae77635a200.nii.gz

UM_2/sub-0050387/mri/aal3_sub-0050387_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050387/mri/aal3_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/anatomy3_sub-0050387_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050387/mri/anatomy3_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/XX/MD5E-s129639--c84b85b3a91e2bb0e5f47314cccc8714.nii.gz/MD5E-s129639--c84b85b3a91e2bb0e5f47314cccc8714.nii.gz

UM_2/sub-0050387/mri/anon_misub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050387/mri/anon_msub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V7/jJ/MD5E-s6889652--5b5500c65b758eb3ca7c48335d6b1950.nii.gz/MD5E-s6889652--5b5500c65b758eb3ca7c48335d6b1950.nii.gz

UM_2/sub-0050387/mri/cat_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/v7/MD5E-s95010--b97210ddf1d8ae8e303f8a01274d4ca2.nii.gz/MD5E-s95010--b97210ddf1d8ae8e303f8a01274d4ca2.nii.gz

UM_2/sub-0050387/mri/cobra_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050387/mri/cobra_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wZ/zx/MD5E-s41919--52d9b8cbc6073e9dc9ed82054327cf4c.nii.gz/MD5E-s41919--52d9b8cbc6073e9dc9ed82054327cf4c.nii.gz

UM_2/sub-0050387/mri/hammers_sub-0050387_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050387/mri/hammers_sub-0050387_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050387/mri/ibsr_sub-0050387_T1w.csv

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UM_2/sub-0050387/mri/ibsr_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/it_sub-0050387_T1w_affine_reorient.mat

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UM_2/sub-0050387/mri/it_sub-0050387_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/31/gm/MD5E-s285--58df285954fef29a0a2daab6d120c7cc.mat/MD5E-s285--58df285954fef29a0a2daab6d120c7cc.mat

UM_2/sub-0050387/mri/iy_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/julichbrain_sub-0050387_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050387/mri/julichbrain_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/lpba40_sub-0050387_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050387/mri/lpba40_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/m0wp1sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/m0wp2sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/m0wp3sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/mori_sub-0050387_T1w.csv

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UM_2/sub-0050387/mri/mori_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/mwp1sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/mwp2sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/mwp3sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/neuromorphometrics_sub-0050387_T1w.csv

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UM_2/sub-0050387/mri/neuromorphometrics_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/p0sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/p1sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/p2sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/p3sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/rp1sub-0050387_T1w_affine.nii.gz

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UM_2/sub-0050387/mri/rp2sub-0050387_T1w_affine.nii.gz

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UM_2/sub-0050387/mri/rp3sub-0050387_T1w_affine.nii.gz

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UM_2/sub-0050387/mri/t_sub-0050387_T1w_affine_reorient.mat

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UM_2/sub-0050387/mri/t_sub-0050387_T1w_rigid_reorient.mat

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UM_2/sub-0050387/mri/thalamus_sub-0050387_T1w.csv

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UM_2/sub-0050387/mri/thalamus_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wj_sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wmisub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wmsub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wp0sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wp1sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wp2sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/wp3sub-0050387_T1w.nii.gz

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UM_2/sub-0050387/mri/y_sub-0050387_T1w.nii.gz

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