[DATALAD RUNCMD] Compute USM/sub-0050445

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050445/anat/sub-0050445_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050445"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050445/label/catROI_sub-0050445_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/xv/MD5E-s61417--5660f1b84d034ba28874647d9e0f059b.mat/MD5E-s61417--5660f1b84d034ba28874647d9e0f059b.mat

USM/sub-0050445/label/catROI_sub-0050445_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j3/WK/MD5E-s189037--cab56cea811da62f142c3272eda52a7d.xml/MD5E-s189037--cab56cea811da62f142c3272eda52a7d.xml

USM/sub-0050445/label/catROIs_sub-0050445_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pP/X3/MD5E-s120050--62baa41698d943b7bccb3276d3044267.mat/MD5E-s120050--62baa41698d943b7bccb3276d3044267.mat

USM/sub-0050445/label/catROIs_sub-0050445_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fw/Zg/MD5E-s332203--4d14333f3c6e591ff93c7a5201bbea65.xml/MD5E-s332203--4d14333f3c6e591ff93c7a5201bbea65.xml

USM/sub-0050445/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050445/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/2W/MD5E-s401053--cb4c905f7c5b65f9cc28d14489809eaf.nii.gz/MD5E-s401053--cb4c905f7c5b65f9cc28d14489809eaf.nii.gz

USM/sub-0050445/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050445/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/39/MD5E-s445172--120d39b13ce938c43cd710bc0391142a.nii.gz/MD5E-s445172--120d39b13ce938c43cd710bc0391142a.nii.gz

USM/sub-0050445/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050445/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zj/pM/MD5E-s641431--0f9a3d621194978ebf7b0b975f030dcc.nii.gz/MD5E-s641431--0f9a3d621194978ebf7b0b975f030dcc.nii.gz

USM/sub-0050445/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050445/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/Qj/MD5E-s705184--c8ea85755b10ef16bebc591669befd17.nii.gz/MD5E-s705184--c8ea85755b10ef16bebc591669befd17.nii.gz

USM/sub-0050445/mri/Tian_Subcortex_S2_7T_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050445/mri/Tian_Subcortex_S2_7T_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G7/Jg/MD5E-s68077--955a738fc32d5000c64853bfc24cbf6d.nii.gz/MD5E-s68077--955a738fc32d5000c64853bfc24cbf6d.nii.gz

USM/sub-0050445/mri/aal3_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050445/mri/aal3_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050445/mri/anatomy3_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050445/mri/anatomy3_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/0j/MD5E-s332954--639233b12d1f862dfebcadc944f652d4.nii.gz/MD5E-s332954--639233b12d1f862dfebcadc944f652d4.nii.gz

USM/sub-0050445/mri/anon_misub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jp/3j/MD5E-s18037912--183b89c2654bbe0a7a6f5098fb72b23b.nii.gz/MD5E-s18037912--183b89c2654bbe0a7a6f5098fb72b23b.nii.gz

USM/sub-0050445/mri/anon_msub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wf/J4/MD5E-s31705499--33987cdcbf0fff7be2516fe53ebb77ec.nii.gz/MD5E-s31705499--33987cdcbf0fff7be2516fe53ebb77ec.nii.gz

USM/sub-0050445/mri/cat_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mx/G6/MD5E-s249411--26252e0cd3b4f3d3c0cba3ba4dcd1aee.nii.gz/MD5E-s249411--26252e0cd3b4f3d3c0cba3ba4dcd1aee.nii.gz

USM/sub-0050445/mri/cobra_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050445/mri/cobra_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/XZ/MD5E-s124577--fe9c9d60a5955eef75e472a5c5c2397b.nii.gz/MD5E-s124577--fe9c9d60a5955eef75e472a5c5c2397b.nii.gz

USM/sub-0050445/mri/hammers_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050445/mri/hammers_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050445/mri/ibsr_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050445/mri/ibsr_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zk/8Z/MD5E-s381038--0cf29f781466ef0f1a45f0d736501afd.nii.gz/MD5E-s381038--0cf29f781466ef0f1a45f0d736501afd.nii.gz

USM/sub-0050445/mri/it_sub-0050445_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9g/M5/MD5E-s283--f1b86c7ed2b71207383c4517c781da90.mat/MD5E-s283--f1b86c7ed2b71207383c4517c781da90.mat

USM/sub-0050445/mri/it_sub-0050445_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/32/43/MD5E-s283--771fc7f07fa3e3050ffcf07b486d934d.mat/MD5E-s283--771fc7f07fa3e3050ffcf07b486d934d.mat

USM/sub-0050445/mri/iy_sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qQ/Wv/MD5E-s158137372--aaf7610507f3e28a1eb8e2b42804f032.nii.gz/MD5E-s158137372--aaf7610507f3e28a1eb8e2b42804f032.nii.gz

USM/sub-0050445/mri/julichbrain_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050445/mri/julichbrain_sub-0050445_T1w.nii.gz

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+../../../.git/annex/objects/P5/Gf/MD5E-s471801--bfaecd3798d6e54d21501376e166df5a.nii.gz/MD5E-s471801--bfaecd3798d6e54d21501376e166df5a.nii.gz

USM/sub-0050445/mri/lpba40_sub-0050445_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050445/mri/lpba40_sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/m0wp1sub-0050445_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050445/mri/m0wp2sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/m0wp3sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/mori_sub-0050445_T1w.csv

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USM/sub-0050445/mri/mori_sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/mwp1sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/mwp2sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/mwp3sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/neuromorphometrics_sub-0050445_T1w.csv

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USM/sub-0050445/mri/neuromorphometrics_sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/p0sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/p1sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/p2sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/p3sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/rp1sub-0050445_T1w_affine.nii.gz

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USM/sub-0050445/mri/rp2sub-0050445_T1w_affine.nii.gz

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USM/sub-0050445/mri/rp3sub-0050445_T1w_affine.nii.gz

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USM/sub-0050445/mri/t_sub-0050445_T1w_affine_reorient.mat

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USM/sub-0050445/mri/t_sub-0050445_T1w_rigid_reorient.mat

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USM/sub-0050445/mri/thalamus_sub-0050445_T1w.csv

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USM/sub-0050445/mri/thalamus_sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wj_sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wmisub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wmsub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wp0sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wp1sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wp2sub-0050445_T1w.nii.gz

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USM/sub-0050445/mri/wp3sub-0050445_T1w.nii.gz

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