[DATALAD RUNCMD] Compute KKI/sub-0050780

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050780/anat/sub-0050780_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050780"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050780/label/catROI_sub-0050780_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M6/P4/MD5E-s61390--5df1abc80992b547f849666fcc2e8517.mat/MD5E-s61390--5df1abc80992b547f849666fcc2e8517.mat

KKI/sub-0050780/label/catROI_sub-0050780_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9q/mf/MD5E-s188941--c2f41a3c68e7ae43ce8ae4b4a53cdb65.xml/MD5E-s188941--c2f41a3c68e7ae43ce8ae4b4a53cdb65.xml

KKI/sub-0050780/label/catROIs_sub-0050780_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kx/z3/MD5E-s120053--5becaafeb9b21ceaced3fa4ff7e28edb.mat/MD5E-s120053--5becaafeb9b21ceaced3fa4ff7e28edb.mat

KKI/sub-0050780/label/catROIs_sub-0050780_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vf/9f/MD5E-s332134--734acda73c2b5e5dea5ec4b7386ba332.xml/MD5E-s332134--734acda73c2b5e5dea5ec4b7386ba332.xml

KKI/sub-0050780/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050780/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/K2/MD5E-s192174--b18bace666ba7f1a5bb785be6634d45c.nii.gz/MD5E-s192174--b18bace666ba7f1a5bb785be6634d45c.nii.gz

KKI/sub-0050780/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050780/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jW/q1/MD5E-s215105--51df7c56a256f13e9892b14dfb2411dc.nii.gz/MD5E-s215105--51df7c56a256f13e9892b14dfb2411dc.nii.gz

KKI/sub-0050780/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050780/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2F/V1/MD5E-s274834--c3f2e8a66f45ee37123dd8ffe9aa42a6.nii.gz/MD5E-s274834--c3f2e8a66f45ee37123dd8ffe9aa42a6.nii.gz

KKI/sub-0050780/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050780/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/wQ/MD5E-s306486--9bf9b7a31b2bf4a3395bd04cc18777ea.nii.gz/MD5E-s306486--9bf9b7a31b2bf4a3395bd04cc18777ea.nii.gz

KKI/sub-0050780/mri/Tian_Subcortex_S2_7T_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050780/mri/Tian_Subcortex_S2_7T_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JK/69/MD5E-s26750--0808d276abbc9ac01e4360d006462caa.nii.gz/MD5E-s26750--0808d276abbc9ac01e4360d006462caa.nii.gz

KKI/sub-0050780/mri/aal3_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050780/mri/aal3_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2p/Gf/MD5E-s213221--1a3e773f90bada995c7ced92fbeb4313.nii.gz/MD5E-s213221--1a3e773f90bada995c7ced92fbeb4313.nii.gz

KKI/sub-0050780/mri/anatomy3_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050780/mri/anatomy3_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6P/0m/MD5E-s155135--2044eb22df9217b9a9f910089c86dc59.nii.gz/MD5E-s155135--2044eb22df9217b9a9f910089c86dc59.nii.gz

KKI/sub-0050780/mri/anon_misub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2p/xk/MD5E-s4483345--31ef1df61bd889d0e519863ba3a73710.nii.gz/MD5E-s4483345--31ef1df61bd889d0e519863ba3a73710.nii.gz

KKI/sub-0050780/mri/anon_msub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/mv/MD5E-s12503369--b5807cad28eb00a923b0ec01bbffab91.nii.gz/MD5E-s12503369--b5807cad28eb00a923b0ec01bbffab91.nii.gz

KKI/sub-0050780/mri/cat_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mX/7z/MD5E-s111822--7c80d21fc629efaf9aa0a0ba1f62ce5c.nii.gz/MD5E-s111822--7c80d21fc629efaf9aa0a0ba1f62ce5c.nii.gz

KKI/sub-0050780/mri/cobra_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050780/mri/cobra_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qj/2Z/MD5E-s53183--6bf0b3912e337c292aade61a6774f907.nii.gz/MD5E-s53183--6bf0b3912e337c292aade61a6774f907.nii.gz

KKI/sub-0050780/mri/hammers_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050780/mri/hammers_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/JP/MD5E-s165695--855cca4b7e0f194edb0146318f18f194.nii.gz/MD5E-s165695--855cca4b7e0f194edb0146318f18f194.nii.gz

KKI/sub-0050780/mri/ibsr_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050780/mri/ibsr_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V8/pF/MD5E-s171594--00ec7da282703ddc3c700c271a6b3ec2.nii.gz/MD5E-s171594--00ec7da282703ddc3c700c271a6b3ec2.nii.gz

KKI/sub-0050780/mri/it_sub-0050780_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4k/Q0/MD5E-s281--15e1c566029b81b3bdbe641d27a8bde3.mat/MD5E-s281--15e1c566029b81b3bdbe641d27a8bde3.mat

KKI/sub-0050780/mri/it_sub-0050780_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w0/ZF/MD5E-s283--97d7dfc72c3a75c1eb74425d1bdfa92e.mat/MD5E-s283--97d7dfc72c3a75c1eb74425d1bdfa92e.mat

KKI/sub-0050780/mri/iy_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MQ/XQ/MD5E-s46566055--f1fc9a18dca8d371c689f7a0fcce2ffb.nii.gz/MD5E-s46566055--f1fc9a18dca8d371c689f7a0fcce2ffb.nii.gz

KKI/sub-0050780/mri/julichbrain_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050780/mri/julichbrain_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zG/Xg/MD5E-s229464--87bb71f48efbaebd99093f7478a6f29d.nii.gz/MD5E-s229464--87bb71f48efbaebd99093f7478a6f29d.nii.gz

KKI/sub-0050780/mri/lpba40_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050780/mri/lpba40_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/m0wp1sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mp/vv/MD5E-s2599381--bdaf15c879a08fb000107a41e0008d15.nii.gz/MD5E-s2599381--bdaf15c879a08fb000107a41e0008d15.nii.gz

KKI/sub-0050780/mri/m0wp2sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/m0wp3sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/mori_sub-0050780_T1w.csv

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KKI/sub-0050780/mri/mori_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/mwp1sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/mwp2sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/mwp3sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/neuromorphometrics_sub-0050780_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

KKI/sub-0050780/mri/neuromorphometrics_sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/p0sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/p1sub-0050780_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050780/mri/p2sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/p3sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/rp1sub-0050780_T1w_affine.nii.gz

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KKI/sub-0050780/mri/rp2sub-0050780_T1w_affine.nii.gz

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KKI/sub-0050780/mri/rp3sub-0050780_T1w_affine.nii.gz

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KKI/sub-0050780/mri/t_sub-0050780_T1w_affine_reorient.mat

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+../../../.git/annex/objects/Jk/f5/MD5E-s283--1bd9221f2cccfc833f7793b4df4613c3.mat/MD5E-s283--1bd9221f2cccfc833f7793b4df4613c3.mat

KKI/sub-0050780/mri/t_sub-0050780_T1w_rigid_reorient.mat

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KKI/sub-0050780/mri/thalamus_sub-0050780_T1w.csv

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KKI/sub-0050780/mri/thalamus_sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wj_sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wmisub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wmsub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wp0sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wp1sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wp2sub-0050780_T1w.nii.gz

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KKI/sub-0050780/mri/wp3sub-0050780_T1w.nii.gz

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