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[DATALAD RUNCMD] Compute USM/sub-0050492

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050492/anat/sub-0050492_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050492"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter 6 months ago
parent
8c4b7e5e26
commit
f80042c203
100 changed files with 99 additions and 0 deletions
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  4. 1 0
      USM/sub-0050492/label/catROIs_sub-0050492_T1w.xml
  5. 1 0
      USM/sub-0050492/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050492_T1w.csv
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  52. 1 0
      USM/sub-0050492/mri/t_sub-0050492_T1w_affine_reorient.mat
  53. 1 0
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  54. 1 0
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  64. 1 0
      USM/sub-0050492/report/cat_sub-0050492_T1w.mat
  65. 1 0
      USM/sub-0050492/report/cat_sub-0050492_T1w.xml
  66. 1 0
      USM/sub-0050492/report/catlog_sub-0050492_T1w.nii.txt
  67. 1 0
      USM/sub-0050492/report/catreport_sub-0050492_T1w.pdf
  68. 1 0
      USM/sub-0050492/report/catreportj_sub-0050492_T1w.jpg
  69. 1 0
      USM/sub-0050492/surf/lh.area.sub-0050492_T1w
  70. 1 0
      USM/sub-0050492/surf/lh.central.sub-0050492_T1w.gii
  71. 1 0
      USM/sub-0050492/surf/lh.depth.sub-0050492_T1w
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      USM/sub-0050492/surf/lh.fractaldimension.sub-0050492_T1w
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      USM/sub-0050492/surf/lh.gmv.sub-0050492_T1w
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  92. 1 0
      USM/sub-0050492/surf/rh.toroGI20mm.sub-0050492_T1w
  93. 1 0
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  94. 1 0
      USM/sub-0050492/surf/s12.mesh.thickness.resampled_32k.sub-0050492_T1w.gii
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      USM/sub-0050492/surf/s22.mesh.area.resampled_32k.sub-0050492_T1w.dat
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      USM/sub-0050492/surf/s22.mesh.area.resampled_32k.sub-0050492_T1w.gii
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USM/sub-0050492/label/catROI_sub-0050492_T1w.mat
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+../../../.git/annex/objects/k1/v9/MD5E-s61409--f163f2cf6338df6dd57c0326c91f534e.mat/MD5E-s61409--f163f2cf6338df6dd57c0326c91f534e.mat

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USM/sub-0050492/label/catROI_sub-0050492_T1w.xml
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+../../../.git/annex/objects/0z/vw/MD5E-s189065--52b8c4c3a5b77d7ed51c1b4cae02276f.xml/MD5E-s189065--52b8c4c3a5b77d7ed51c1b4cae02276f.xml

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USM/sub-0050492/label/catROIs_sub-0050492_T1w.mat
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USM/sub-0050492/label/catROIs_sub-0050492_T1w.xml
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USM/sub-0050492/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050492_T1w.csv
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USM/sub-0050492/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050492_T1w.nii.gz
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USM/sub-0050492/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050492_T1w.csv
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USM/sub-0050492/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050492_T1w.csv
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USM/sub-0050492/mri/ibsr_sub-0050492_T1w.csv
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USM/sub-0050492/mri/it_sub-0050492_T1w_affine_reorient.mat
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