[DATALAD RUNCMD] Compute UM_2/sub-0050426

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050426/anat/sub-0050426_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050426"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050426/label/catROI_sub-0050426_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Z/q9/MD5E-s61429--4414c0e5f4a8a23dfd73ba4ef5352907.mat/MD5E-s61429--4414c0e5f4a8a23dfd73ba4ef5352907.mat

UM_2/sub-0050426/label/catROI_sub-0050426_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FW/4z/MD5E-s189154--7be515fb04598f52abc3d83d04cf4dc2.xml/MD5E-s189154--7be515fb04598f52abc3d83d04cf4dc2.xml

UM_2/sub-0050426/label/catROIs_sub-0050426_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6W/59/MD5E-s120076--e39b21851e22d45ec6c9b6f5ae0d0029.mat/MD5E-s120076--e39b21851e22d45ec6c9b6f5ae0d0029.mat

UM_2/sub-0050426/label/catROIs_sub-0050426_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zF/kZ/MD5E-s332014--135d32967f556f1bd611fe71b666226f.xml/MD5E-s332014--135d32967f556f1bd611fe71b666226f.xml

UM_2/sub-0050426/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050426/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z4/6F/MD5E-s155286--f2847f31723e3940a47ae2ebef2e3ec3.nii.gz/MD5E-s155286--f2847f31723e3940a47ae2ebef2e3ec3.nii.gz

UM_2/sub-0050426/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050426/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0w/37/MD5E-s174741--1a85179b8dd6f58300a12c58e695e9d0.nii.gz/MD5E-s174741--1a85179b8dd6f58300a12c58e695e9d0.nii.gz

UM_2/sub-0050426/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050426/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p6/WZ/MD5E-s220117--5e4fb015ee91562eba21dabcd3e06c9d.nii.gz/MD5E-s220117--5e4fb015ee91562eba21dabcd3e06c9d.nii.gz

UM_2/sub-0050426/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050426/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kg/90/MD5E-s245003--93193ab7e085c1d80856c9eed5337764.nii.gz/MD5E-s245003--93193ab7e085c1d80856c9eed5337764.nii.gz

UM_2/sub-0050426/mri/Tian_Subcortex_S2_7T_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050426/mri/Tian_Subcortex_S2_7T_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050426/mri/aal3_sub-0050426_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050426/mri/aal3_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/anatomy3_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/anatomy3_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050426/mri/anon_misub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050426/mri/anon_msub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050426/mri/cat_sub-0050426_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050426/mri/cobra_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050426/mri/cobra_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/hammers_sub-0050426_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050426/mri/hammers_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/ibsr_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/ibsr_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/it_sub-0050426_T1w_affine_reorient.mat

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UM_2/sub-0050426/mri/it_sub-0050426_T1w_rigid_reorient.mat

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UM_2/sub-0050426/mri/iy_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/julichbrain_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/julichbrain_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/lpba40_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/lpba40_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/m0wp1sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/m0wp2sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/m0wp3sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/mori_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/mori_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/mwp1sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/mwp2sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/mwp3sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/neuromorphometrics_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/neuromorphometrics_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/p0sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/p1sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/p2sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/p3sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/rp1sub-0050426_T1w_affine.nii.gz

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UM_2/sub-0050426/mri/rp2sub-0050426_T1w_affine.nii.gz

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UM_2/sub-0050426/mri/rp3sub-0050426_T1w_affine.nii.gz

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UM_2/sub-0050426/mri/t_sub-0050426_T1w_affine_reorient.mat

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UM_2/sub-0050426/mri/t_sub-0050426_T1w_rigid_reorient.mat

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UM_2/sub-0050426/mri/thalamus_sub-0050426_T1w.csv

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UM_2/sub-0050426/mri/thalamus_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/wj_sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/wmisub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/wmsub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/wp0sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/wp1sub-0050426_T1w.nii.gz

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UM_2/sub-0050426/mri/wp2sub-0050426_T1w.nii.gz

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