[DATALAD RUNCMD] Compute USM/sub-0050483

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050483/anat/sub-0050483_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050483"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050483/label/catROI_sub-0050483_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XW/M2/MD5E-s61375--2bc515d6dc811838c84f456131d0db49.mat/MD5E-s61375--2bc515d6dc811838c84f456131d0db49.mat

USM/sub-0050483/label/catROI_sub-0050483_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pp/f2/MD5E-s189267--4098d42195571baf8e2e71381e8fac80.xml/MD5E-s189267--4098d42195571baf8e2e71381e8fac80.xml

USM/sub-0050483/label/catROIs_sub-0050483_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zp/K2/MD5E-s120072--6945e4d00b8ab36e230bc1d3cd4c084b.mat/MD5E-s120072--6945e4d00b8ab36e230bc1d3cd4c084b.mat

USM/sub-0050483/label/catROIs_sub-0050483_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zV/FF/MD5E-s332170--d353262de6c407a9552af6fa6ba007f5.xml/MD5E-s332170--d353262de6c407a9552af6fa6ba007f5.xml

USM/sub-0050483/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050483/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wx/7p/MD5E-s374078--794b54077e82606c27b9ccbb65b34c17.nii.gz/MD5E-s374078--794b54077e82606c27b9ccbb65b34c17.nii.gz

USM/sub-0050483/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050483/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xQ/PK/MD5E-s416167--25490b007005ed919680aea2f52d05c2.nii.gz/MD5E-s416167--25490b007005ed919680aea2f52d05c2.nii.gz

USM/sub-0050483/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050483/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/WF/MD5E-s601293--9a9db95bcdf5986e6a1cae2e51f2f016.nii.gz/MD5E-s601293--9a9db95bcdf5986e6a1cae2e51f2f016.nii.gz

USM/sub-0050483/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050483/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1j/kF/MD5E-s660277--4759a9d553d24363f91926ccc8781ca2.nii.gz/MD5E-s660277--4759a9d553d24363f91926ccc8781ca2.nii.gz

USM/sub-0050483/mri/Tian_Subcortex_S2_7T_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050483/mri/Tian_Subcortex_S2_7T_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6F/f8/MD5E-s68134--724a83fb8d98a0496839851026a2c6c0.nii.gz/MD5E-s68134--724a83fb8d98a0496839851026a2c6c0.nii.gz

USM/sub-0050483/mri/aal3_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050483/mri/aal3_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7v/xg/MD5E-s423145--138734f9c6d9fad9d01a5f83789f3a5f.nii.gz/MD5E-s423145--138734f9c6d9fad9d01a5f83789f3a5f.nii.gz

USM/sub-0050483/mri/anatomy3_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050483/mri/anatomy3_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0G/4Q/MD5E-s315138--1efeb589cc19015945aac715ca659720.nii.gz/MD5E-s315138--1efeb589cc19015945aac715ca659720.nii.gz

USM/sub-0050483/mri/anon_misub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/kZ/MD5E-s17138048--0a92817ab2f931cce0894de0bd84d610.nii.gz/MD5E-s17138048--0a92817ab2f931cce0894de0bd84d610.nii.gz

USM/sub-0050483/mri/anon_msub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/04/Vj/MD5E-s29213629--e84e6fedd1caff38c14bceab999aed91.nii.gz/MD5E-s29213629--e84e6fedd1caff38c14bceab999aed91.nii.gz

USM/sub-0050483/mri/cat_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qG/GF/MD5E-s236114--277e917c8d6965a723978790991d8abc.nii.gz/MD5E-s236114--277e917c8d6965a723978790991d8abc.nii.gz

USM/sub-0050483/mri/cobra_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050483/mri/cobra_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z7/1F/MD5E-s123501--861d6e6431ff1a2c359582e5613f245a.nii.gz/MD5E-s123501--861d6e6431ff1a2c359582e5613f245a.nii.gz

USM/sub-0050483/mri/hammers_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050483/mri/hammers_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gg/J1/MD5E-s337867--83ec99f836a12161256bf9ebea010a69.nii.gz/MD5E-s337867--83ec99f836a12161256bf9ebea010a69.nii.gz

USM/sub-0050483/mri/ibsr_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050483/mri/ibsr_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2G/G8/MD5E-s360934--35944b86212140c2e4b89cec4a0bb933.nii.gz/MD5E-s360934--35944b86212140c2e4b89cec4a0bb933.nii.gz

USM/sub-0050483/mri/it_sub-0050483_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kp/KG/MD5E-s283--0b6d92f4dd70e526d841c5fbe321b186.mat/MD5E-s283--0b6d92f4dd70e526d841c5fbe321b186.mat

USM/sub-0050483/mri/it_sub-0050483_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/m2/m6/MD5E-s282--063540b19744a3cd05116f34c11dcd5a.mat/MD5E-s282--063540b19744a3cd05116f34c11dcd5a.mat

USM/sub-0050483/mri/iy_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J2/vg/MD5E-s148261472--433e49b8a71ee9bb9bca2b3f3f7dcae6.nii.gz/MD5E-s148261472--433e49b8a71ee9bb9bca2b3f3f7dcae6.nii.gz

USM/sub-0050483/mri/julichbrain_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050483/mri/julichbrain_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5g/1w/MD5E-s444172--511c0341beeb5fc83ca7fef94f917d83.nii.gz/MD5E-s444172--511c0341beeb5fc83ca7fef94f917d83.nii.gz

USM/sub-0050483/mri/lpba40_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050483/mri/lpba40_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WZ/32/MD5E-s333636--0703c43c42bf82b875d7a7379ab0b524.nii.gz/MD5E-s333636--0703c43c42bf82b875d7a7379ab0b524.nii.gz

USM/sub-0050483/mri/m0wp1sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/50/MD5E-s2567783--b89ab63baed770be81f08870c0e9011e.nii.gz/MD5E-s2567783--b89ab63baed770be81f08870c0e9011e.nii.gz

USM/sub-0050483/mri/m0wp2sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6V/v7/MD5E-s2272650--24151bfe6e1b03c791d7cd79c146da84.nii.gz/MD5E-s2272650--24151bfe6e1b03c791d7cd79c146da84.nii.gz

USM/sub-0050483/mri/m0wp3sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F2/v1/MD5E-s2479628--8ac68133633e3c08509a56f287057733.nii.gz/MD5E-s2479628--8ac68133633e3c08509a56f287057733.nii.gz

USM/sub-0050483/mri/mori_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050483/mri/mori_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050483/mri/mwp1sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z3/pQ/MD5E-s2573615--f8ae4a5a00fd881a788914ee04e83618.nii.gz/MD5E-s2573615--f8ae4a5a00fd881a788914ee04e83618.nii.gz

USM/sub-0050483/mri/mwp2sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/fj/MD5E-s2274404--bbdd8ea8d8353e4d580a16aba85838c5.nii.gz/MD5E-s2274404--bbdd8ea8d8353e4d580a16aba85838c5.nii.gz

USM/sub-0050483/mri/mwp3sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WV/4M/MD5E-s2479583--1d9e138bc9a6d1a19fe5399406c1f531.nii.gz/MD5E-s2479583--1d9e138bc9a6d1a19fe5399406c1f531.nii.gz

USM/sub-0050483/mri/neuromorphometrics_sub-0050483_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050483/mri/neuromorphometrics_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jQ/9G/MD5E-s457645--cd1b27aa8c612707fdce8f3d91dc32d9.nii.gz/MD5E-s457645--cd1b27aa8c612707fdce8f3d91dc32d9.nii.gz

USM/sub-0050483/mri/p0sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/QG/MD5E-s3685763--6a3c360e4cdd37d947940237addbe864.nii.gz/MD5E-s3685763--6a3c360e4cdd37d947940237addbe864.nii.gz

USM/sub-0050483/mri/p1sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K1/7M/MD5E-s3588456--9b4d6ea3e2c9bdb1334bc43431ebceae.nii.gz/MD5E-s3588456--9b4d6ea3e2c9bdb1334bc43431ebceae.nii.gz

USM/sub-0050483/mri/p2sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j8/8M/MD5E-s2492836--c05e64db262d1d6148d9be16ffba119c.nii.gz/MD5E-s2492836--c05e64db262d1d6148d9be16ffba119c.nii.gz

USM/sub-0050483/mri/p3sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/37/MD5E-s2426359--87ed07c6d0249f42793819d8be01e3c5.nii.gz/MD5E-s2426359--87ed07c6d0249f42793819d8be01e3c5.nii.gz

USM/sub-0050483/mri/rp1sub-0050483_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zQ/w3/MD5E-s422983--25ed0f7e5758cf2391a0d274894079be.nii.gz/MD5E-s422983--25ed0f7e5758cf2391a0d274894079be.nii.gz

USM/sub-0050483/mri/rp2sub-0050483_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QK/Qf/MD5E-s281277--821db2d67bfe6820342244ff945209db.nii.gz/MD5E-s281277--821db2d67bfe6820342244ff945209db.nii.gz

USM/sub-0050483/mri/rp3sub-0050483_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/vj/MD5E-s263650--a4a1f2c09eaabaed49127a5224ed0b3e.nii.gz/MD5E-s263650--a4a1f2c09eaabaed49127a5224ed0b3e.nii.gz

USM/sub-0050483/mri/t_sub-0050483_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vq/f0/MD5E-s282--4f098fb3d7519e20020c957e2ab8a0cd.mat/MD5E-s282--4f098fb3d7519e20020c957e2ab8a0cd.mat

USM/sub-0050483/mri/t_sub-0050483_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/jg/MD5E-s284--b6bb5fa2e0981a9223dbdb0dd53d758f.mat/MD5E-s284--b6bb5fa2e0981a9223dbdb0dd53d758f.mat

USM/sub-0050483/mri/thalamus_sub-0050483_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050483/mri/thalamus_sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050483/mri/wj_sub-0050483_T1w.nii.gz

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USM/sub-0050483/mri/wmisub-0050483_T1w.nii.gz

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USM/sub-0050483/mri/wmsub-0050483_T1w.nii.gz

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USM/sub-0050483/mri/wp0sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050483/mri/wp1sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050483/mri/wp2sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/km/2F/MD5E-s433228--ae7bbbb556ccecb2a2a26c1f3b97da54.nii.gz/MD5E-s433228--ae7bbbb556ccecb2a2a26c1f3b97da54.nii.gz

USM/sub-0050483/mri/wp3sub-0050483_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050483/mri/y_sub-0050483_T1w.nii.gz

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