[DATALAD RUNCMD] Compute Leuven_2/sub-0050726

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050726/anat/sub-0050726_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050726"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050726/label/catROI_sub-0050726_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qp/k2/MD5E-s61436--5a6df58feae5a96c1c2b5ca47eb528d1.mat/MD5E-s61436--5a6df58feae5a96c1c2b5ca47eb528d1.mat

Leuven_2/sub-0050726/label/catROI_sub-0050726_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Z/F3/MD5E-s188834--d3023dd5f2242ed150af1caaf3427746.xml/MD5E-s188834--d3023dd5f2242ed150af1caaf3427746.xml

Leuven_2/sub-0050726/label/catROIs_sub-0050726_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f9/Qj/MD5E-s120083--8bd0a84ae3a1135800942d5aa070cba3.mat/MD5E-s120083--8bd0a84ae3a1135800942d5aa070cba3.mat

Leuven_2/sub-0050726/label/catROIs_sub-0050726_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zg/0W/MD5E-s332101--45aaeedfdb9f1fa18a8492b97bd2e4fd.xml/MD5E-s332101--45aaeedfdb9f1fa18a8492b97bd2e4fd.xml

Leuven_2/sub-0050726/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050726/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fx/wf/MD5E-s183768--22a61b858af61ec0cf4e8709c8fdec93.nii.gz/MD5E-s183768--22a61b858af61ec0cf4e8709c8fdec93.nii.gz

Leuven_2/sub-0050726/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050726/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pv/0M/MD5E-s206230--c6c56eb5fcf0da9ea573527f00d69968.nii.gz/MD5E-s206230--c6c56eb5fcf0da9ea573527f00d69968.nii.gz

Leuven_2/sub-0050726/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050726/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F4/qm/MD5E-s261209--97af3c95b424854f9c6c0d9995ed37d4.nii.gz/MD5E-s261209--97af3c95b424854f9c6c0d9995ed37d4.nii.gz

Leuven_2/sub-0050726/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050726/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0W/XP/MD5E-s292475--5cc4a41af0db709b821eff9d6559c50c.nii.gz/MD5E-s292475--5cc4a41af0db709b821eff9d6559c50c.nii.gz

Leuven_2/sub-0050726/mri/Tian_Subcortex_S2_7T_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050726/mri/Tian_Subcortex_S2_7T_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6q/vz/MD5E-s25826--e703b05b5208ea26b48090a90c153fc9.nii.gz/MD5E-s25826--e703b05b5208ea26b48090a90c153fc9.nii.gz

Leuven_2/sub-0050726/mri/aal3_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050726/mri/aal3_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/anatomy3_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050726/mri/anatomy3_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MG/Wx/MD5E-s147688--22733c65fb56fdac5d7230b020d127c8.nii.gz/MD5E-s147688--22733c65fb56fdac5d7230b020d127c8.nii.gz

Leuven_2/sub-0050726/mri/anon_misub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2w/PV/MD5E-s5868571--db8f313d551b4525ff73f0b929f9478e.nii.gz/MD5E-s5868571--db8f313d551b4525ff73f0b929f9478e.nii.gz

Leuven_2/sub-0050726/mri/anon_msub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/85/gV/MD5E-s12258299--d1410dc44f91ae3d1374d4ae66dc767b.nii.gz/MD5E-s12258299--d1410dc44f91ae3d1374d4ae66dc767b.nii.gz

Leuven_2/sub-0050726/mri/cat_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zm/f4/MD5E-s108726--601cb9230daa85b60dae2eac72844544.nii.gz/MD5E-s108726--601cb9230daa85b60dae2eac72844544.nii.gz

Leuven_2/sub-0050726/mri/cobra_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050726/mri/cobra_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PV/g8/MD5E-s52942--54453e93edbe93dce5abc72dcdf2d251.nii.gz/MD5E-s52942--54453e93edbe93dce5abc72dcdf2d251.nii.gz

Leuven_2/sub-0050726/mri/hammers_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050726/mri/hammers_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6V/GK/MD5E-s161310--4ae91e7be00eff9f8149627506811399.nii.gz/MD5E-s161310--4ae91e7be00eff9f8149627506811399.nii.gz

Leuven_2/sub-0050726/mri/ibsr_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050726/mri/ibsr_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z0/1W/MD5E-s166701--28f2a6588a642523a6244fc1092e9ce2.nii.gz/MD5E-s166701--28f2a6588a642523a6244fc1092e9ce2.nii.gz

Leuven_2/sub-0050726/mri/it_sub-0050726_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mz/Zx/MD5E-s283--680dbd08a756d0505480892f5cd70a5b.mat/MD5E-s283--680dbd08a756d0505480892f5cd70a5b.mat

Leuven_2/sub-0050726/mri/it_sub-0050726_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/m7/MD5E-s283--f0daf5bed9dee4dae79fc43dad136648.mat/MD5E-s283--f0daf5bed9dee4dae79fc43dad136648.mat

Leuven_2/sub-0050726/mri/iy_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/q5/MD5E-s44959096--b8269a8ff4e06c9c70b5411182e82d87.nii.gz/MD5E-s44959096--b8269a8ff4e06c9c70b5411182e82d87.nii.gz

Leuven_2/sub-0050726/mri/julichbrain_sub-0050726_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050726/mri/julichbrain_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/70/X1/MD5E-s218999--a92c3485390e4eb737cbbd022a076a6d.nii.gz/MD5E-s218999--a92c3485390e4eb737cbbd022a076a6d.nii.gz

Leuven_2/sub-0050726/mri/lpba40_sub-0050726_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/lpba40_sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/m0wp1sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/m0wp2sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fj/XZ/MD5E-s2292658--a3ae321575834ec7bbaada262cadbaac.nii.gz/MD5E-s2292658--a3ae321575834ec7bbaada262cadbaac.nii.gz

Leuven_2/sub-0050726/mri/m0wp3sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/mori_sub-0050726_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/mori_sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/mwp1sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/Vz/MD5E-s2597329--2871610b7636c43c48a10f834e1b7076.nii.gz/MD5E-s2597329--2871610b7636c43c48a10f834e1b7076.nii.gz

Leuven_2/sub-0050726/mri/mwp2sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/mwp3sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/neuromorphometrics_sub-0050726_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/neuromorphometrics_sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/p0sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/p1sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/p2sub-0050726_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/p3sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/rp1sub-0050726_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050726/mri/rp2sub-0050726_T1w_affine.nii.gz

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Leuven_2/sub-0050726/mri/rp3sub-0050726_T1w_affine.nii.gz

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+../../../.git/annex/objects/f2/Ww/MD5E-s277272--cb43a9e028c0dded8a935dadbb14385d.nii.gz/MD5E-s277272--cb43a9e028c0dded8a935dadbb14385d.nii.gz

Leuven_2/sub-0050726/mri/t_sub-0050726_T1w_affine_reorient.mat

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Leuven_2/sub-0050726/mri/t_sub-0050726_T1w_rigid_reorient.mat

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Leuven_2/sub-0050726/mri/thalamus_sub-0050726_T1w.csv

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Leuven_2/sub-0050726/mri/thalamus_sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/wj_sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/wmisub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/wmsub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/wp0sub-0050726_T1w.nii.gz

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Leuven_2/sub-0050726/mri/wp1sub-0050726_T1w.nii.gz

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