[DATALAD RUNCMD] Compute Leuven_2/sub-0050728

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050728/anat/sub-0050728_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050728"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050728/label/catROI_sub-0050728_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/X9/fv/MD5E-s61293--109a29c690e16818724ed58cde6b4b89.mat/MD5E-s61293--109a29c690e16818724ed58cde6b4b89.mat

Leuven_2/sub-0050728/label/catROI_sub-0050728_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Z/76/MD5E-s189017--57fbfca52f6d74926f9e922bd75e17ef.xml/MD5E-s189017--57fbfca52f6d74926f9e922bd75e17ef.xml

Leuven_2/sub-0050728/label/catROIs_sub-0050728_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zW/w9/MD5E-s120140--13fa049e7487d58f6c43e18704926626.mat/MD5E-s120140--13fa049e7487d58f6c43e18704926626.mat

Leuven_2/sub-0050728/label/catROIs_sub-0050728_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0M/M4/MD5E-s332161--254589d1eea76af1f77c1538b4ec0f5d.xml/MD5E-s332161--254589d1eea76af1f77c1538b4ec0f5d.xml

Leuven_2/sub-0050728/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050728/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vx/qz/MD5E-s167050--34d1305941e5f23fd302777984709949.nii.gz/MD5E-s167050--34d1305941e5f23fd302777984709949.nii.gz

Leuven_2/sub-0050728/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050728/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/3k/MD5E-s186691--f88990cdb80645563c32d41130b6c135.nii.gz/MD5E-s186691--f88990cdb80645563c32d41130b6c135.nii.gz

Leuven_2/sub-0050728/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050728/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vJ/Zp/MD5E-s238752--f183af499aa5b72cda0bed2798a8308a.nii.gz/MD5E-s238752--f183af499aa5b72cda0bed2798a8308a.nii.gz

Leuven_2/sub-0050728/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050728/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w5/P9/MD5E-s265794--749ae83022a8edabeafd536ac9e9ff4b.nii.gz/MD5E-s265794--749ae83022a8edabeafd536ac9e9ff4b.nii.gz

Leuven_2/sub-0050728/mri/Tian_Subcortex_S2_7T_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050728/mri/Tian_Subcortex_S2_7T_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZK/4f/MD5E-s24429--9ba800bfc574c09e4c4e827e2df222eb.nii.gz/MD5E-s24429--9ba800bfc574c09e4c4e827e2df222eb.nii.gz

Leuven_2/sub-0050728/mri/aal3_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050728/mri/aal3_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/anatomy3_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050728/mri/anatomy3_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J3/F7/MD5E-s134211--cd48f9a7fa4ab166c6abdd5223c887b4.nii.gz/MD5E-s134211--cd48f9a7fa4ab166c6abdd5223c887b4.nii.gz

Leuven_2/sub-0050728/mri/anon_misub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6f/QQ/MD5E-s4648159--4e003f05123bb597a78a347ffbfb071f.nii.gz/MD5E-s4648159--4e003f05123bb597a78a347ffbfb071f.nii.gz

Leuven_2/sub-0050728/mri/anon_msub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/19/20/MD5E-s11620874--0aec5427f5f1cde84e60aa7435f50353.nii.gz/MD5E-s11620874--0aec5427f5f1cde84e60aa7435f50353.nii.gz

Leuven_2/sub-0050728/mri/cat_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xf/xj/MD5E-s98871--0c7ba836522cf3e7783ade2c48c6f0c7.nii.gz/MD5E-s98871--0c7ba836522cf3e7783ade2c48c6f0c7.nii.gz

Leuven_2/sub-0050728/mri/cobra_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050728/mri/cobra_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/Zv/MD5E-s48814--2a3674fb11bbe37ba88edd5876c40b1a.nii.gz/MD5E-s48814--2a3674fb11bbe37ba88edd5876c40b1a.nii.gz

Leuven_2/sub-0050728/mri/hammers_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050728/mri/hammers_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XF/6q/MD5E-s147041--c23461450a4f7bc78417935c78d0f2ca.nii.gz/MD5E-s147041--c23461450a4f7bc78417935c78d0f2ca.nii.gz

Leuven_2/sub-0050728/mri/ibsr_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050728/mri/ibsr_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3F/JF/MD5E-s151882--c2c80c6ed94cc9a12a0a0061b6bfb03e.nii.gz/MD5E-s151882--c2c80c6ed94cc9a12a0a0061b6bfb03e.nii.gz

Leuven_2/sub-0050728/mri/it_sub-0050728_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/jm/MD5E-s283--9ce6131dd5883c2ab5badd00e474fe57.mat/MD5E-s283--9ce6131dd5883c2ab5badd00e474fe57.mat

Leuven_2/sub-0050728/mri/it_sub-0050728_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wv/Vz/MD5E-s283--3f2b14ef39ac3eb367554a3151068ad6.mat/MD5E-s283--3f2b14ef39ac3eb367554a3151068ad6.mat

Leuven_2/sub-0050728/mri/iy_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7K/mZ/MD5E-s39006171--fd9b700524092ebe0185764d490d0c45.nii.gz/MD5E-s39006171--fd9b700524092ebe0185764d490d0c45.nii.gz

Leuven_2/sub-0050728/mri/julichbrain_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050728/mri/julichbrain_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QX/x4/MD5E-s198724--a229cae784e122b1d5d2f4a1c72b90c8.nii.gz/MD5E-s198724--a229cae784e122b1d5d2f4a1c72b90c8.nii.gz

Leuven_2/sub-0050728/mri/lpba40_sub-0050728_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_2/sub-0050728/mri/lpba40_sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/m0wp1sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/m0wp2sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8K/QP/MD5E-s2276049--b6f609fb16e7ba0688bfd37475981053.nii.gz/MD5E-s2276049--b6f609fb16e7ba0688bfd37475981053.nii.gz

Leuven_2/sub-0050728/mri/m0wp3sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/mori_sub-0050728_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/mori_sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/mwp1sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/70/qG/MD5E-s2616122--30407f3a162b40f23c11008459c5f5c2.nii.gz/MD5E-s2616122--30407f3a162b40f23c11008459c5f5c2.nii.gz

Leuven_2/sub-0050728/mri/mwp2sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/1j/MD5E-s2276270--11e9fc48e5943eb450963456dab4ef54.nii.gz/MD5E-s2276270--11e9fc48e5943eb450963456dab4ef54.nii.gz

Leuven_2/sub-0050728/mri/mwp3sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/neuromorphometrics_sub-0050728_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/neuromorphometrics_sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/p0sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/p1sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/p2sub-0050728_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/p3sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/rp1sub-0050728_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050728/mri/rp2sub-0050728_T1w_affine.nii.gz

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Leuven_2/sub-0050728/mri/rp3sub-0050728_T1w_affine.nii.gz

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Leuven_2/sub-0050728/mri/t_sub-0050728_T1w_affine_reorient.mat

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Leuven_2/sub-0050728/mri/t_sub-0050728_T1w_rigid_reorient.mat

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Leuven_2/sub-0050728/mri/thalamus_sub-0050728_T1w.csv

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Leuven_2/sub-0050728/mri/thalamus_sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/wj_sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/wmisub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/wmsub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/wp0sub-0050728_T1w.nii.gz

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Leuven_2/sub-0050728/mri/wp1sub-0050728_T1w.nii.gz

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