[DATALAD RUNCMD] Compute SDSU/sub-0050209

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SDSU/sub-0050209/anat/sub-0050209_T1w.nii.gz"
 ],
 "outputs": [
  "SDSU/sub-0050209"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SDSU/sub-0050209/label/catROI_sub-0050209_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pV/WK/MD5E-s58200--9a4ad78431b58c44f901a0efd1b133a5.mat/MD5E-s58200--9a4ad78431b58c44f901a0efd1b133a5.mat

SDSU/sub-0050209/label/catROI_sub-0050209_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/57/JW/MD5E-s188861--7ebb4f7c0721830b28dda85df805b93b.xml/MD5E-s188861--7ebb4f7c0721830b28dda85df805b93b.xml

SDSU/sub-0050209/label/catROIs_sub-0050209_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/05/7K/MD5E-s120099--c0318f04f6af01f70a517b47c2ab2c26.mat/MD5E-s120099--c0318f04f6af01f70a517b47c2ab2c26.mat

SDSU/sub-0050209/label/catROIs_sub-0050209_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/JX/MD5E-s332005--caaa9533f0f83199af56e68d5d347941.xml/MD5E-s332005--caaa9533f0f83199af56e68d5d347941.xml

SDSU/sub-0050209/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SDSU/sub-0050209/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kq/gm/MD5E-s184084--cbfc024dea37e4a5a3c700eb713eba52.nii.gz/MD5E-s184084--cbfc024dea37e4a5a3c700eb713eba52.nii.gz

SDSU/sub-0050209/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SDSU/sub-0050209/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V0/kw/MD5E-s208641--14660f35af9fd675faa2d3dc5b821ce1.nii.gz/MD5E-s208641--14660f35af9fd675faa2d3dc5b821ce1.nii.gz

SDSU/sub-0050209/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SDSU/sub-0050209/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3K/60/MD5E-s281385--983060122b043dc2b4bef2e4dbef45c1.nii.gz/MD5E-s281385--983060122b043dc2b4bef2e4dbef45c1.nii.gz

SDSU/sub-0050209/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SDSU/sub-0050209/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gf/X1/MD5E-s313183--9d25c72e5b5b88d959e50d7b142a3fbb.nii.gz/MD5E-s313183--9d25c72e5b5b88d959e50d7b142a3fbb.nii.gz

SDSU/sub-0050209/mri/Tian_Subcortex_S2_7T_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SDSU/sub-0050209/mri/Tian_Subcortex_S2_7T_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jz/zp/MD5E-s25600--df18630a66f122969a68cc0f7a43d3db.nii.gz/MD5E-s25600--df18630a66f122969a68cc0f7a43d3db.nii.gz

SDSU/sub-0050209/mri/aal3_sub-0050209_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050209/mri/aal3_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/anatomy3_sub-0050209_T1w.csv

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SDSU/sub-0050209/mri/anatomy3_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zM/6V/MD5E-s151082--9fe6a8ce2a47c248d9863664e7807abe.nii.gz/MD5E-s151082--9fe6a8ce2a47c248d9863664e7807abe.nii.gz

SDSU/sub-0050209/mri/anon_misub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050209/mri/anon_msub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GF/Jg/MD5E-s11032947--ce072d4fa508b966fd1a5d92ca26ae98.nii.gz/MD5E-s11032947--ce072d4fa508b966fd1a5d92ca26ae98.nii.gz

SDSU/sub-0050209/mri/cat_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050209/mri/cobra_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SDSU/sub-0050209/mri/cobra_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/wM/MD5E-s51619--551410dd32e2d0725d8b7dc301eea4d2.nii.gz/MD5E-s51619--551410dd32e2d0725d8b7dc301eea4d2.nii.gz

SDSU/sub-0050209/mri/hammers_sub-0050209_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SDSU/sub-0050209/mri/hammers_sub-0050209_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P7/vz/MD5E-s162506--454e123af04659f22e7fa5e37821ad43.nii.gz/MD5E-s162506--454e123af04659f22e7fa5e37821ad43.nii.gz

SDSU/sub-0050209/mri/ibsr_sub-0050209_T1w.csv

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SDSU/sub-0050209/mri/ibsr_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/it_sub-0050209_T1w_affine_reorient.mat

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SDSU/sub-0050209/mri/it_sub-0050209_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/G9/2z/MD5E-s284--8c55a4f8686de886568f3003631bd99a.mat/MD5E-s284--8c55a4f8686de886568f3003631bd99a.mat

SDSU/sub-0050209/mri/iy_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/julichbrain_sub-0050209_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SDSU/sub-0050209/mri/julichbrain_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/lpba40_sub-0050209_T1w.csv

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SDSU/sub-0050209/mri/lpba40_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/m0wp1sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/m0wp2sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/m0wp3sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/mori_sub-0050209_T1w.csv

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SDSU/sub-0050209/mri/mori_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/mwp1sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/mwp2sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/mwp3sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/neuromorphometrics_sub-0050209_T1w.csv

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SDSU/sub-0050209/mri/neuromorphometrics_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/p0sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/p1sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/p2sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/p3sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/rp1sub-0050209_T1w_affine.nii.gz

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SDSU/sub-0050209/mri/rp2sub-0050209_T1w_affine.nii.gz

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SDSU/sub-0050209/mri/rp3sub-0050209_T1w_affine.nii.gz

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SDSU/sub-0050209/mri/t_sub-0050209_T1w_affine_reorient.mat

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SDSU/sub-0050209/mri/t_sub-0050209_T1w_rigid_reorient.mat

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SDSU/sub-0050209/mri/thalamus_sub-0050209_T1w.csv

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SDSU/sub-0050209/mri/thalamus_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wj_sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wmisub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wmsub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wp0sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wp1sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wp2sub-0050209_T1w.nii.gz

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SDSU/sub-0050209/mri/wp3sub-0050209_T1w.nii.gz

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