[DATALAD RUNCMD] Compute Pitt/sub-0050020

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050020/anat/sub-0050020_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050020"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050020/label/catROI_sub-0050020_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XG/09/MD5E-s61345--4755d32f0231c2f62c61f89a151d8008.mat/MD5E-s61345--4755d32f0231c2f62c61f89a151d8008.mat

Pitt/sub-0050020/label/catROI_sub-0050020_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/zk/MD5E-s188887--e8c26c8d90c5ff72bcf122227a85b47d.xml/MD5E-s188887--e8c26c8d90c5ff72bcf122227a85b47d.xml

Pitt/sub-0050020/label/catROIs_sub-0050020_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/54/MD5E-s120092--37176003bb5cdaf00a07b9c42ed0a07f.mat/MD5E-s120092--37176003bb5cdaf00a07b9c42ed0a07f.mat

Pitt/sub-0050020/label/catROIs_sub-0050020_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZK/fZ/MD5E-s332187--2440a9e460beba78fc04c1e935bd3658.xml/MD5E-s332187--2440a9e460beba78fc04c1e935bd3658.xml

Pitt/sub-0050020/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050020/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MQ/PF/MD5E-s153150--3f50aff1ae7a9a946734d6ce37799415.nii.gz/MD5E-s153150--3f50aff1ae7a9a946734d6ce37799415.nii.gz

Pitt/sub-0050020/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050020/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mP/fQ/MD5E-s173126--411f76b042d771aa430e40718640fe49.nii.gz/MD5E-s173126--411f76b042d771aa430e40718640fe49.nii.gz

Pitt/sub-0050020/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050020/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3X/vw/MD5E-s232875--2b4a27a37c4897fd1c89c38d4580e25f.nii.gz/MD5E-s232875--2b4a27a37c4897fd1c89c38d4580e25f.nii.gz

Pitt/sub-0050020/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050020/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/P9/MD5E-s260577--2fa5b46ef87ff8fc17bde0ec78608418.nii.gz/MD5E-s260577--2fa5b46ef87ff8fc17bde0ec78608418.nii.gz

Pitt/sub-0050020/mri/Tian_Subcortex_S2_7T_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050020/mri/Tian_Subcortex_S2_7T_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9V/Mq/MD5E-s24146--61f126159c71619e88bad9084288c213.nii.gz/MD5E-s24146--61f126159c71619e88bad9084288c213.nii.gz

Pitt/sub-0050020/mri/aal3_sub-0050020_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050020/mri/aal3_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/anatomy3_sub-0050020_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050020/mri/anatomy3_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050020/mri/anon_misub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050020/mri/anon_msub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FW/wK/MD5E-s12380264--b3fb93ccd8a9c1a7ff2259eb303f56a6.nii.gz/MD5E-s12380264--b3fb93ccd8a9c1a7ff2259eb303f56a6.nii.gz

Pitt/sub-0050020/mri/cat_sub-0050020_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q0/mX/MD5E-s96050--dbba8aeda769534d92f42ffd8f04f75a.nii.gz/MD5E-s96050--dbba8aeda769534d92f42ffd8f04f75a.nii.gz

Pitt/sub-0050020/mri/cobra_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050020/mri/cobra_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/hammers_sub-0050020_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050020/mri/hammers_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/ibsr_sub-0050020_T1w.csv

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Pitt/sub-0050020/mri/ibsr_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/it_sub-0050020_T1w_affine_reorient.mat

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Pitt/sub-0050020/mri/it_sub-0050020_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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Pitt/sub-0050020/mri/iy_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/julichbrain_sub-0050020_T1w.csv

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Pitt/sub-0050020/mri/julichbrain_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/lpba40_sub-0050020_T1w.csv

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Pitt/sub-0050020/mri/lpba40_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/m0wp1sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/m0wp2sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/m0wp3sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/mori_sub-0050020_T1w.csv

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Pitt/sub-0050020/mri/mori_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/mwp1sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/mwp2sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/mwp3sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/neuromorphometrics_sub-0050020_T1w.csv

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Pitt/sub-0050020/mri/neuromorphometrics_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/p0sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/p1sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/p2sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/p3sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/rp1sub-0050020_T1w_affine.nii.gz

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Pitt/sub-0050020/mri/rp2sub-0050020_T1w_affine.nii.gz

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Pitt/sub-0050020/mri/rp3sub-0050020_T1w_affine.nii.gz

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Pitt/sub-0050020/mri/t_sub-0050020_T1w_affine_reorient.mat

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Pitt/sub-0050020/mri/t_sub-0050020_T1w_rigid_reorient.mat

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Pitt/sub-0050020/mri/thalamus_sub-0050020_T1w.csv

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Pitt/sub-0050020/mri/thalamus_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/wj_sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/wmisub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/wmsub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/wp0sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/wp1sub-0050020_T1w.nii.gz

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Pitt/sub-0050020/mri/wp2sub-0050020_T1w.nii.gz

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