[DATALAD RUNCMD] Compute USM/sub-0050482

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050482/anat/sub-0050482_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050482"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050482/label/catROI_sub-0050482_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/FV/MD5E-s61376--df8419a855a3163f4ab2335911b144a8.mat/MD5E-s61376--df8419a855a3163f4ab2335911b144a8.mat

USM/sub-0050482/label/catROI_sub-0050482_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gz/Qk/MD5E-s189414--997b0e381ca39352e82c0ac7ccf7d74c.xml/MD5E-s189414--997b0e381ca39352e82c0ac7ccf7d74c.xml

USM/sub-0050482/label/catROIs_sub-0050482_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/Fj/MD5E-s120011--80dd7ffcae1aee62e79056030679187e.mat/MD5E-s120011--80dd7ffcae1aee62e79056030679187e.mat

USM/sub-0050482/label/catROIs_sub-0050482_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pM/J0/MD5E-s332094--79636a35565ed49899b5fe6fd378c644.xml/MD5E-s332094--79636a35565ed49899b5fe6fd378c644.xml

USM/sub-0050482/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050482/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m4/Wm/MD5E-s373608--ff1ccee4aa035901192ab9b7de1aee2b.nii.gz/MD5E-s373608--ff1ccee4aa035901192ab9b7de1aee2b.nii.gz

USM/sub-0050482/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050482/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fj/vJ/MD5E-s415940--9e6435717da0fae769c95ace6a9fcbbe.nii.gz/MD5E-s415940--9e6435717da0fae769c95ace6a9fcbbe.nii.gz

USM/sub-0050482/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050482/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J1/m7/MD5E-s601163--c25defe13316150fa900181c173c0831.nii.gz/MD5E-s601163--c25defe13316150fa900181c173c0831.nii.gz

USM/sub-0050482/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050482/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gw/1W/MD5E-s661489--c4327d410d1a61b54977bdd8505ef2b3.nii.gz/MD5E-s661489--c4327d410d1a61b54977bdd8505ef2b3.nii.gz

USM/sub-0050482/mri/Tian_Subcortex_S2_7T_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050482/mri/Tian_Subcortex_S2_7T_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fJ/P4/MD5E-s68702--4ad40e125434540b520819f3c6ddaeca.nii.gz/MD5E-s68702--4ad40e125434540b520819f3c6ddaeca.nii.gz

USM/sub-0050482/mri/aal3_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050482/mri/aal3_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/g5/MD5E-s419444--c5c73954d39ed0a24960f6714296641e.nii.gz/MD5E-s419444--c5c73954d39ed0a24960f6714296641e.nii.gz

USM/sub-0050482/mri/anatomy3_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050482/mri/anatomy3_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Z/Zf/MD5E-s313704--3dae16df0e88ddbe487e3426336dd1b0.nii.gz/MD5E-s313704--3dae16df0e88ddbe487e3426336dd1b0.nii.gz

USM/sub-0050482/mri/anon_misub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4m/15/MD5E-s17446826--da788c7651e4242461b62e042d290414.nii.gz/MD5E-s17446826--da788c7651e4242461b62e042d290414.nii.gz

USM/sub-0050482/mri/anon_msub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X1/P4/MD5E-s39579587--87d1c225af14b8ff91f4fbf38dfa0d94.nii.gz/MD5E-s39579587--87d1c225af14b8ff91f4fbf38dfa0d94.nii.gz

USM/sub-0050482/mri/cat_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2K/2G/MD5E-s244740--060248deac948f15d8193a732a7085f3.nii.gz/MD5E-s244740--060248deac948f15d8193a732a7085f3.nii.gz

USM/sub-0050482/mri/cobra_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050482/mri/cobra_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m2/Qq/MD5E-s120938--5d048305d4736815ba1b672a398078c9.nii.gz/MD5E-s120938--5d048305d4736815ba1b672a398078c9.nii.gz

USM/sub-0050482/mri/hammers_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050482/mri/hammers_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J7/1m/MD5E-s343847--615c7328997e062eda84ac179943e5f5.nii.gz/MD5E-s343847--615c7328997e062eda84ac179943e5f5.nii.gz

USM/sub-0050482/mri/ibsr_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050482/mri/ibsr_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qK/QG/MD5E-s361998--047358622e36fbffa50221fb82028e86.nii.gz/MD5E-s361998--047358622e36fbffa50221fb82028e86.nii.gz

USM/sub-0050482/mri/it_sub-0050482_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gp/8f/MD5E-s284--f248c6ffbffbe514b3e60f9c1e00688a.mat/MD5E-s284--f248c6ffbffbe514b3e60f9c1e00688a.mat

USM/sub-0050482/mri/it_sub-0050482_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/qg/MD5E-s284--7f81df1bd19804401f9032a2c0ef078c.mat/MD5E-s284--7f81df1bd19804401f9032a2c0ef078c.mat

USM/sub-0050482/mri/iy_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WW/gM/MD5E-s144573784--cb13771aadbc87dcd4e166c4b3c59ed8.nii.gz/MD5E-s144573784--cb13771aadbc87dcd4e166c4b3c59ed8.nii.gz

USM/sub-0050482/mri/julichbrain_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050482/mri/julichbrain_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/1p/MD5E-s444644--8e909c8bb9e4adfb28a8934dd6842a37.nii.gz/MD5E-s444644--8e909c8bb9e4adfb28a8934dd6842a37.nii.gz

USM/sub-0050482/mri/lpba40_sub-0050482_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050482/mri/lpba40_sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jf/gK/MD5E-s335840--1e02d184f04be555d0dbe525198ddd2a.nii.gz/MD5E-s335840--1e02d184f04be555d0dbe525198ddd2a.nii.gz

USM/sub-0050482/mri/m0wp1sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/k1/MD5E-s2559069--f5ec63122200f1e77814b649ee650c4a.nii.gz/MD5E-s2559069--f5ec63122200f1e77814b649ee650c4a.nii.gz

USM/sub-0050482/mri/m0wp2sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JZ/k6/MD5E-s2260762--3be01c59f311d2ecd383dcdefe9d548e.nii.gz/MD5E-s2260762--3be01c59f311d2ecd383dcdefe9d548e.nii.gz

USM/sub-0050482/mri/m0wp3sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/mori_sub-0050482_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050482/mri/mori_sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/mwp1sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050482/mri/mwp2sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050482/mri/mwp3sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050482/mri/neuromorphometrics_sub-0050482_T1w.csv

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USM/sub-0050482/mri/neuromorphometrics_sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/p0sub-0050482_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050482/mri/p1sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/p2sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/p3sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/rp1sub-0050482_T1w_affine.nii.gz

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USM/sub-0050482/mri/rp2sub-0050482_T1w_affine.nii.gz

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USM/sub-0050482/mri/rp3sub-0050482_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050482/mri/t_sub-0050482_T1w_affine_reorient.mat

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USM/sub-0050482/mri/t_sub-0050482_T1w_rigid_reorient.mat

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USM/sub-0050482/mri/thalamus_sub-0050482_T1w.csv

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USM/sub-0050482/mri/thalamus_sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wj_sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wmisub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wmsub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wp0sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wp1sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wp2sub-0050482_T1w.nii.gz

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USM/sub-0050482/mri/wp3sub-0050482_T1w.nii.gz

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