[DATALAD RUNCMD] Compute UM_2/sub-0050382

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050382/anat/sub-0050382_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050382"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050382/label/catROI_sub-0050382_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/72/gg/MD5E-s61339--e9368261a1c7de459226dd33e345c8df.mat/MD5E-s61339--e9368261a1c7de459226dd33e345c8df.mat

UM_2/sub-0050382/label/catROI_sub-0050382_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/1K/MD5E-s188880--98d244e7891e3970af90c42b7f605763.xml/MD5E-s188880--98d244e7891e3970af90c42b7f605763.xml

UM_2/sub-0050382/label/catROIs_sub-0050382_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xm/Pm/MD5E-s120140--583b38da88f46b218a0bf514748e6ea2.mat/MD5E-s120140--583b38da88f46b218a0bf514748e6ea2.mat

UM_2/sub-0050382/label/catROIs_sub-0050382_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/29/MD5E-s332116--d4a19f2124dde38420294ed36f9db7da.xml/MD5E-s332116--d4a19f2124dde38420294ed36f9db7da.xml

UM_2/sub-0050382/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050382/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v1/q4/MD5E-s158741--4974fbb3066a945d7263ce6d2cac0da1.nii.gz/MD5E-s158741--4974fbb3066a945d7263ce6d2cac0da1.nii.gz

UM_2/sub-0050382/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050382/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w4/Wv/MD5E-s178736--6f971b2129d88ed8cc5aa3c901133930.nii.gz/MD5E-s178736--6f971b2129d88ed8cc5aa3c901133930.nii.gz

UM_2/sub-0050382/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050382/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/kZ/MD5E-s225751--2418c0fd12cbcc68cc85810bfd0c5194.nii.gz/MD5E-s225751--2418c0fd12cbcc68cc85810bfd0c5194.nii.gz

UM_2/sub-0050382/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050382/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/77/wf/MD5E-s250705--06ea6d28c14eb2561c6e32a1a88322a3.nii.gz/MD5E-s250705--06ea6d28c14eb2561c6e32a1a88322a3.nii.gz

UM_2/sub-0050382/mri/Tian_Subcortex_S2_7T_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050382/mri/Tian_Subcortex_S2_7T_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kJ/mf/MD5E-s20189--816af7c5a966eb351aa172e5a8166c0c.nii.gz/MD5E-s20189--816af7c5a966eb351aa172e5a8166c0c.nii.gz

UM_2/sub-0050382/mri/aal3_sub-0050382_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/aal3_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/anatomy3_sub-0050382_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/anatomy3_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/anon_misub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/anon_msub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZK/0Q/MD5E-s6996004--f8e2c52be6eb8bfa5ae8c6ce879aadfe.nii.gz/MD5E-s6996004--f8e2c52be6eb8bfa5ae8c6ce879aadfe.nii.gz

UM_2/sub-0050382/mri/cat_sub-0050382_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/cobra_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050382/mri/cobra_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/hammers_sub-0050382_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050382/mri/hammers_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/ibsr_sub-0050382_T1w.csv

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UM_2/sub-0050382/mri/ibsr_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/it_sub-0050382_T1w_affine_reorient.mat

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UM_2/sub-0050382/mri/it_sub-0050382_T1w_rigid_reorient.mat

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UM_2/sub-0050382/mri/iy_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/julichbrain_sub-0050382_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/julichbrain_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/lpba40_sub-0050382_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050382/mri/lpba40_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/m0wp1sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/m0wp2sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/m0wp3sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/mori_sub-0050382_T1w.csv

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UM_2/sub-0050382/mri/mori_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/mwp1sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/mwp2sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/mwp3sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/neuromorphometrics_sub-0050382_T1w.csv

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UM_2/sub-0050382/mri/neuromorphometrics_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/p0sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/p1sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/p2sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/p3sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/rp1sub-0050382_T1w_affine.nii.gz

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UM_2/sub-0050382/mri/rp2sub-0050382_T1w_affine.nii.gz

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UM_2/sub-0050382/mri/rp3sub-0050382_T1w_affine.nii.gz

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UM_2/sub-0050382/mri/t_sub-0050382_T1w_affine_reorient.mat

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UM_2/sub-0050382/mri/t_sub-0050382_T1w_rigid_reorient.mat

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UM_2/sub-0050382/mri/thalamus_sub-0050382_T1w.csv

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UM_2/sub-0050382/mri/thalamus_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wj_sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wmisub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wmsub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wp0sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wp1sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wp2sub-0050382_T1w.nii.gz

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UM_2/sub-0050382/mri/wp3sub-0050382_T1w.nii.gz

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