[DATALAD RUNCMD] Compute USM/sub-0050513

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050513/anat/sub-0050513_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050513"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050513/label/catROI_sub-0050513_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KK/Fv/MD5E-s61397--514adedf0e61d9b96a30a7338af0b979.mat/MD5E-s61397--514adedf0e61d9b96a30a7338af0b979.mat

USM/sub-0050513/label/catROI_sub-0050513_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/7g/MD5E-s189147--8b7401a40d5daf6d0b38ba0edd4cdcd8.xml/MD5E-s189147--8b7401a40d5daf6d0b38ba0edd4cdcd8.xml

USM/sub-0050513/label/catROIs_sub-0050513_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xf/Zv/MD5E-s120079--5dd0286800661ef4fafc8d475ee53c86.mat/MD5E-s120079--5dd0286800661ef4fafc8d475ee53c86.mat

USM/sub-0050513/label/catROIs_sub-0050513_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/kQ/11/MD5E-s332146--1c02234f830d95cd0c4d6279919919bd.xml/MD5E-s332146--1c02234f830d95cd0c4d6279919919bd.xml

USM/sub-0050513/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050513/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6p/j0/MD5E-s386078--e2b7a25e10fbffed2bad679fc3bd94b3.nii.gz/MD5E-s386078--e2b7a25e10fbffed2bad679fc3bd94b3.nii.gz

USM/sub-0050513/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050513/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P4/1X/MD5E-s430420--f28c2b1b9f18ccc3b77c45add949ae4c.nii.gz/MD5E-s430420--f28c2b1b9f18ccc3b77c45add949ae4c.nii.gz

USM/sub-0050513/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050513/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/Qg/MD5E-s620751--e828c04e2319bd6da41fee9585833287.nii.gz/MD5E-s620751--e828c04e2319bd6da41fee9585833287.nii.gz

USM/sub-0050513/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050513/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/vq/MD5E-s681599--04186476218bcd0aefcdb247165e817b.nii.gz/MD5E-s681599--04186476218bcd0aefcdb247165e817b.nii.gz

USM/sub-0050513/mri/Tian_Subcortex_S2_7T_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050513/mri/Tian_Subcortex_S2_7T_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X0/FW/MD5E-s69538--3f45f8cb4c3ea37e0df591429bc8987e.nii.gz/MD5E-s69538--3f45f8cb4c3ea37e0df591429bc8987e.nii.gz

USM/sub-0050513/mri/aal3_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050513/mri/aal3_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/zV/MD5E-s433764--b32d91c22b87786c0ed1cbf870172a93.nii.gz/MD5E-s433764--b32d91c22b87786c0ed1cbf870172a93.nii.gz

USM/sub-0050513/mri/anatomy3_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050513/mri/anatomy3_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/X4/MD5E-s324882--f37852bc22f5396488b617df6a429be7.nii.gz/MD5E-s324882--f37852bc22f5396488b617df6a429be7.nii.gz

USM/sub-0050513/mri/anon_misub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V8/G0/MD5E-s18775255--98c65869a8be339921802a357f837cd8.nii.gz/MD5E-s18775255--98c65869a8be339921802a357f837cd8.nii.gz

USM/sub-0050513/mri/anon_msub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X5/m9/MD5E-s30166766--e2040bd9c24b2dfa00abf461a33a6980.nii.gz/MD5E-s30166766--e2040bd9c24b2dfa00abf461a33a6980.nii.gz

USM/sub-0050513/mri/cat_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Q/x4/MD5E-s247352--793496d6f733a67d57c1136b3fc37447.nii.gz/MD5E-s247352--793496d6f733a67d57c1136b3fc37447.nii.gz

USM/sub-0050513/mri/cobra_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050513/mri/cobra_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z9/Mg/MD5E-s130650--1cc36fd02435566993b6ad612ad7c04a.nii.gz/MD5E-s130650--1cc36fd02435566993b6ad612ad7c04a.nii.gz

USM/sub-0050513/mri/hammers_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050513/mri/hammers_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z8/mj/MD5E-s350102--9b8c5ddb74877d263d80b9513607921c.nii.gz/MD5E-s350102--9b8c5ddb74877d263d80b9513607921c.nii.gz

USM/sub-0050513/mri/ibsr_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050513/mri/ibsr_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/2x/MD5E-s371306--be05a2308e909adcc23eb8e3573fa07d.nii.gz/MD5E-s371306--be05a2308e909adcc23eb8e3573fa07d.nii.gz

USM/sub-0050513/mri/it_sub-0050513_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q3/0M/MD5E-s283--16a39c8fda481ba5a3ad2372d24ea640.mat/MD5E-s283--16a39c8fda481ba5a3ad2372d24ea640.mat

USM/sub-0050513/mri/it_sub-0050513_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/km/37/MD5E-s282--91ad4ba44a20c8ba5be2463190bb29bc.mat/MD5E-s282--91ad4ba44a20c8ba5be2463190bb29bc.mat

USM/sub-0050513/mri/iy_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gz/3q/MD5E-s152620852--32a1fa3c3e0e4112ffab00293f3e10d3.nii.gz/MD5E-s152620852--32a1fa3c3e0e4112ffab00293f3e10d3.nii.gz

USM/sub-0050513/mri/julichbrain_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050513/mri/julichbrain_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x5/KP/MD5E-s458785--2c16e9326aa0358b1b19b701f59de14b.nii.gz/MD5E-s458785--2c16e9326aa0358b1b19b701f59de14b.nii.gz

USM/sub-0050513/mri/lpba40_sub-0050513_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050513/mri/lpba40_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X7/qz/MD5E-s343729--b33e949fbbddf8547a2b784e0679e833.nii.gz/MD5E-s343729--b33e949fbbddf8547a2b784e0679e833.nii.gz

USM/sub-0050513/mri/m0wp1sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/50/xP/MD5E-s2574692--af8601f6a8ada013046e2d99997bb14f.nii.gz/MD5E-s2574692--af8601f6a8ada013046e2d99997bb14f.nii.gz

USM/sub-0050513/mri/m0wp2sub-0050513_T1w.nii.gz

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+../../../.git/annex/objects/Kf/qW/MD5E-s2270306--f44fedbd8ba1abf477e5fb745c0cb3f6.nii.gz/MD5E-s2270306--f44fedbd8ba1abf477e5fb745c0cb3f6.nii.gz

USM/sub-0050513/mri/m0wp3sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xQ/vf/MD5E-s2556185--7d13e46eb714c39dbef6ff9d3cc204d2.nii.gz/MD5E-s2556185--7d13e46eb714c39dbef6ff9d3cc204d2.nii.gz

USM/sub-0050513/mri/mori_sub-0050513_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050513/mri/mori_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/mwp1sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/mwp2sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/mwp3sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PG/6Z/MD5E-s2556278--255187f8000fa9d7246c482aa227f815.nii.gz/MD5E-s2556278--255187f8000fa9d7246c482aa227f815.nii.gz

USM/sub-0050513/mri/neuromorphometrics_sub-0050513_T1w.csv

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+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050513/mri/neuromorphometrics_sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1K/g7/MD5E-s472217--c6b557305e45c10cd4758a322275ea35.nii.gz/MD5E-s472217--c6b557305e45c10cd4758a322275ea35.nii.gz

USM/sub-0050513/mri/p0sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/p1sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/p2sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/p3sub-0050513_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/rp1sub-0050513_T1w_affine.nii.gz

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USM/sub-0050513/mri/rp2sub-0050513_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050513/mri/rp3sub-0050513_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mg/4j/MD5E-s285563--6597032af785abb1875feb506e1ae8fe.nii.gz/MD5E-s285563--6597032af785abb1875feb506e1ae8fe.nii.gz

USM/sub-0050513/mri/t_sub-0050513_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/2W/MD5E-s284--370922e3cefb833d201fbed4caaa11ea.mat/MD5E-s284--370922e3cefb833d201fbed4caaa11ea.mat

USM/sub-0050513/mri/t_sub-0050513_T1w_rigid_reorient.mat

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USM/sub-0050513/mri/thalamus_sub-0050513_T1w.csv

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USM/sub-0050513/mri/thalamus_sub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wj_sub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wmisub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wmsub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wp0sub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wp1sub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wp2sub-0050513_T1w.nii.gz

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USM/sub-0050513/mri/wp3sub-0050513_T1w.nii.gz

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