[DATALAD RUNCMD] Compute USM/sub-0050526

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050526/anat/sub-0050526_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050526"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050526/label/catROI_sub-0050526_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zM/PF/MD5E-s61341--ef6562410ec760026a6472d8e294c81f.mat/MD5E-s61341--ef6562410ec760026a6472d8e294c81f.mat

USM/sub-0050526/label/catROI_sub-0050526_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qf/K3/MD5E-s189005--a8db337b02192e52109a9414e6eae406.xml/MD5E-s189005--a8db337b02192e52109a9414e6eae406.xml

USM/sub-0050526/label/catROIs_sub-0050526_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2x/Kj/MD5E-s120062--5401c0142f44315a4e6f8364259e375b.mat/MD5E-s120062--5401c0142f44315a4e6f8364259e375b.mat

USM/sub-0050526/label/catROIs_sub-0050526_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9X/fw/MD5E-s332139--8684fb63d71ea7df6e0b3e4f425878fd.xml/MD5E-s332139--8684fb63d71ea7df6e0b3e4f425878fd.xml

USM/sub-0050526/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050526/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V5/xZ/MD5E-s417360--5964ee408aa13933da9fe05d21a7b5d3.nii.gz/MD5E-s417360--5964ee408aa13933da9fe05d21a7b5d3.nii.gz

USM/sub-0050526/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050526/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/4j/MD5E-s463101--056e50130c4a6e9e59559a3660197821.nii.gz/MD5E-s463101--056e50130c4a6e9e59559a3660197821.nii.gz

USM/sub-0050526/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050526/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xz/zQ/MD5E-s663109--26fac9650100503b66282e1bb8ba9529.nii.gz/MD5E-s663109--26fac9650100503b66282e1bb8ba9529.nii.gz

USM/sub-0050526/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050526/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MM/jZ/MD5E-s729518--7c32a2525583b2c0878ecadfb4cbde9b.nii.gz/MD5E-s729518--7c32a2525583b2c0878ecadfb4cbde9b.nii.gz

USM/sub-0050526/mri/Tian_Subcortex_S2_7T_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050526/mri/Tian_Subcortex_S2_7T_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PK/3J/MD5E-s71093--b07c58000c7335ae9db9a05c3f885aaf.nii.gz/MD5E-s71093--b07c58000c7335ae9db9a05c3f885aaf.nii.gz

USM/sub-0050526/mri/aal3_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050526/mri/aal3_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xM/qG/MD5E-s473439--9d78355b5f64d4755800e90fde1e2764.nii.gz/MD5E-s473439--9d78355b5f64d4755800e90fde1e2764.nii.gz

USM/sub-0050526/mri/anatomy3_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050526/mri/anatomy3_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5M/G9/MD5E-s349197--adf863b5f1892980f1462f48ccf1744d.nii.gz/MD5E-s349197--adf863b5f1892980f1462f48ccf1744d.nii.gz

USM/sub-0050526/mri/anon_misub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5G/7g/MD5E-s19717961--bb448b837a05322a08332d89455dac18.nii.gz/MD5E-s19717961--bb448b837a05322a08332d89455dac18.nii.gz

USM/sub-0050526/mri/anon_msub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x3/vG/MD5E-s40587625--70e52f7fe96dc5da8e8f3e2dfd6a818e.nii.gz/MD5E-s40587625--70e52f7fe96dc5da8e8f3e2dfd6a818e.nii.gz

USM/sub-0050526/mri/cat_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mf/4X/MD5E-s287727--f7509647a816cdff6c4eeaaa61a459fa.nii.gz/MD5E-s287727--f7509647a816cdff6c4eeaaa61a459fa.nii.gz

USM/sub-0050526/mri/cobra_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050526/mri/cobra_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gV/MP/MD5E-s130155--9f30fbf0c19b0a012f064f4fe4d58e98.nii.gz/MD5E-s130155--9f30fbf0c19b0a012f064f4fe4d58e98.nii.gz

USM/sub-0050526/mri/hammers_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050526/mri/hammers_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/x0/MD5E-s378135--7189366d1770bc51ff953362eab9056c.nii.gz/MD5E-s378135--7189366d1770bc51ff953362eab9056c.nii.gz

USM/sub-0050526/mri/ibsr_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050526/mri/ibsr_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K3/kp/MD5E-s400275--b18e0a88dfeda66bcdb519dcdd7878bb.nii.gz/MD5E-s400275--b18e0a88dfeda66bcdb519dcdd7878bb.nii.gz

USM/sub-0050526/mri/it_sub-0050526_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J1/0Z/MD5E-s282--1352bd3f5aaf812fafc63205c49ca11c.mat/MD5E-s282--1352bd3f5aaf812fafc63205c49ca11c.mat

USM/sub-0050526/mri/it_sub-0050526_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2M/G1/MD5E-s281--0bfd069c2fbf07dd1f7f0059917b6bea.mat/MD5E-s281--0bfd069c2fbf07dd1f7f0059917b6bea.mat

USM/sub-0050526/mri/iy_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2f/Qp/MD5E-s163422508--b8c2b98a047cc6347bf3d984887a4efc.nii.gz/MD5E-s163422508--b8c2b98a047cc6347bf3d984887a4efc.nii.gz

USM/sub-0050526/mri/julichbrain_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050526/mri/julichbrain_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/FZ/MD5E-s495831--060e0476f2286eb27fd4b0ce47d76496.nii.gz/MD5E-s495831--060e0476f2286eb27fd4b0ce47d76496.nii.gz

USM/sub-0050526/mri/lpba40_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050526/mri/lpba40_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gz/Pp/MD5E-s370170--5d60ea0919f50b3b9a87ba464c328f12.nii.gz/MD5E-s370170--5d60ea0919f50b3b9a87ba464c328f12.nii.gz

USM/sub-0050526/mri/m0wp1sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kz/k4/MD5E-s2562529--0fbeacef88b23854c1d4f9705929a8ff.nii.gz/MD5E-s2562529--0fbeacef88b23854c1d4f9705929a8ff.nii.gz

USM/sub-0050526/mri/m0wp2sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2F/Mf/MD5E-s2272888--eb286905bd9124d0e4bf409f6ed3cb31.nii.gz/MD5E-s2272888--eb286905bd9124d0e4bf409f6ed3cb31.nii.gz

USM/sub-0050526/mri/m0wp3sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/VV/MD5E-s2604931--56fa02f011767ec095e0fdb83e27abe0.nii.gz/MD5E-s2604931--56fa02f011767ec095e0fdb83e27abe0.nii.gz

USM/sub-0050526/mri/mori_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050526/mri/mori_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050526/mri/mwp1sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GW/6Z/MD5E-s2565267--a21fea9042dca845db7afdd221cb1d52.nii.gz/MD5E-s2565267--a21fea9042dca845db7afdd221cb1d52.nii.gz

USM/sub-0050526/mri/mwp2sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3G/xm/MD5E-s2273083--59d3a8b53c378f8ce45bfe4d237b14a4.nii.gz/MD5E-s2273083--59d3a8b53c378f8ce45bfe4d237b14a4.nii.gz

USM/sub-0050526/mri/mwp3sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gp/MK/MD5E-s2605553--390b64cad14afabd6e7ce5ad335cbc19.nii.gz/MD5E-s2605553--390b64cad14afabd6e7ce5ad335cbc19.nii.gz

USM/sub-0050526/mri/neuromorphometrics_sub-0050526_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050526/mri/neuromorphometrics_sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gP/g4/MD5E-s506280--eda478853ee14d15c5904e415e4dd8ab.nii.gz/MD5E-s506280--eda478853ee14d15c5904e415e4dd8ab.nii.gz

USM/sub-0050526/mri/p0sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0F/pq/MD5E-s3931812--902ee9b5234fa8037e629fa925d63f92.nii.gz/MD5E-s3931812--902ee9b5234fa8037e629fa925d63f92.nii.gz

USM/sub-0050526/mri/p1sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wj/qf/MD5E-s3731274--f3149aa1083736a796d64d3d13bb7bed.nii.gz/MD5E-s3731274--f3149aa1083736a796d64d3d13bb7bed.nii.gz

USM/sub-0050526/mri/p2sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050526/mri/p3sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050526/mri/rp1sub-0050526_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050526/mri/rp2sub-0050526_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X1/Zm/MD5E-s264194--a4eee7914207bc80f4b64e936178c961.nii.gz/MD5E-s264194--a4eee7914207bc80f4b64e936178c961.nii.gz

USM/sub-0050526/mri/rp3sub-0050526_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050526/mri/t_sub-0050526_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jk/1P/MD5E-s284--c610990aad316c0e7406216817586ecc.mat/MD5E-s284--c610990aad316c0e7406216817586ecc.mat

USM/sub-0050526/mri/t_sub-0050526_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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USM/sub-0050526/mri/thalamus_sub-0050526_T1w.csv

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USM/sub-0050526/mri/thalamus_sub-0050526_T1w.nii.gz

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USM/sub-0050526/mri/wj_sub-0050526_T1w.nii.gz

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USM/sub-0050526/mri/wmisub-0050526_T1w.nii.gz

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USM/sub-0050526/mri/wmsub-0050526_T1w.nii.gz

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USM/sub-0050526/mri/wp0sub-0050526_T1w.nii.gz

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USM/sub-0050526/mri/wp1sub-0050526_T1w.nii.gz

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USM/sub-0050526/mri/wp2sub-0050526_T1w.nii.gz

@@ -0,0 +1 @@
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