[DATALAD RUNCMD] Compute UM_1/sub-0050341

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050341/anat/sub-0050341_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050341"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050341/label/catROI_sub-0050341_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/67/g2/MD5E-s61334--b2a3275fb51f814f7a7a40626469d6e5.mat/MD5E-s61334--b2a3275fb51f814f7a7a40626469d6e5.mat

UM_1/sub-0050341/label/catROI_sub-0050341_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/z5/68/MD5E-s189173--cf7d23ac02d42ba04c2e94469f20de97.xml/MD5E-s189173--cf7d23ac02d42ba04c2e94469f20de97.xml

UM_1/sub-0050341/label/catROIs_sub-0050341_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/98/MD5E-s120128--c7db0c07235e157127a6999aa4ded2db.mat/MD5E-s120128--c7db0c07235e157127a6999aa4ded2db.mat

UM_1/sub-0050341/label/catROIs_sub-0050341_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8g/g1/MD5E-s332131--21cdf4a2cbfc5f83b4672907790a940d.xml/MD5E-s332131--21cdf4a2cbfc5f83b4672907790a940d.xml

UM_1/sub-0050341/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050341/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/88/gW/MD5E-s124719--cbdf004961b80367ab217207e0c4ff8c.nii.gz/MD5E-s124719--cbdf004961b80367ab217207e0c4ff8c.nii.gz

UM_1/sub-0050341/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050341/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5K/K6/MD5E-s140369--7988580118c208839035bf0079af849c.nii.gz/MD5E-s140369--7988580118c208839035bf0079af849c.nii.gz

UM_1/sub-0050341/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050341/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3V/PP/MD5E-s175483--8eb8610fce3b55f2386d82e726fee909.nii.gz/MD5E-s175483--8eb8610fce3b55f2386d82e726fee909.nii.gz

UM_1/sub-0050341/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050341/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qF/QF/MD5E-s195651--c528f1aa4cb753adb445288656244937.nii.gz/MD5E-s195651--c528f1aa4cb753adb445288656244937.nii.gz

UM_1/sub-0050341/mri/Tian_Subcortex_S2_7T_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050341/mri/Tian_Subcortex_S2_7T_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J2/vz/MD5E-s16108--cc6d568080ad7b75a10df020f3f24d5b.nii.gz/MD5E-s16108--cc6d568080ad7b75a10df020f3f24d5b.nii.gz

UM_1/sub-0050341/mri/aal3_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/aal3_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/anatomy3_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/anatomy3_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050341/mri/anon_misub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/anon_msub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qg/WM/MD5E-s5546583--77ecec4a1855591f4ee3e6d6875f4d41.nii.gz/MD5E-s5546583--77ecec4a1855591f4ee3e6d6875f4d41.nii.gz

UM_1/sub-0050341/mri/cat_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050341/mri/cobra_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050341/mri/cobra_sub-0050341_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050341/mri/hammers_sub-0050341_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050341/mri/hammers_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/ibsr_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/ibsr_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/it_sub-0050341_T1w_affine_reorient.mat

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UM_1/sub-0050341/mri/it_sub-0050341_T1w_rigid_reorient.mat

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UM_1/sub-0050341/mri/iy_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/julichbrain_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/julichbrain_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/lpba40_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/lpba40_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/m0wp1sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/m0wp2sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/m0wp3sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/mori_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/mori_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/mwp1sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/mwp2sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/mwp3sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/neuromorphometrics_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/neuromorphometrics_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/p0sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/p1sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/p2sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/p3sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/rp1sub-0050341_T1w_affine.nii.gz

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UM_1/sub-0050341/mri/rp2sub-0050341_T1w_affine.nii.gz

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UM_1/sub-0050341/mri/rp3sub-0050341_T1w_affine.nii.gz

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UM_1/sub-0050341/mri/t_sub-0050341_T1w_affine_reorient.mat

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UM_1/sub-0050341/mri/t_sub-0050341_T1w_rigid_reorient.mat

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UM_1/sub-0050341/mri/thalamus_sub-0050341_T1w.csv

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UM_1/sub-0050341/mri/thalamus_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wj_sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wmisub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wmsub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wp0sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wp1sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wp2sub-0050341_T1w.nii.gz

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UM_1/sub-0050341/mri/wp3sub-0050341_T1w.nii.gz

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